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Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers.
Brunner AL, Beck AH, Edris B, Sweeney RT, Zhu SX, Li R, Montgomery K, Varma S, Gilks T, Guo X, Foley JW, Witten DM, Giacomini CP, Flynn RA, Pollack JR, Tibshirani R, Chang HY, van de Rijn M, West RB. Brunner AL, et al. Among authors: foley jw. Genome Biol. 2012 Aug 28;13(8):R75. doi: 10.1186/gb-2012-13-8-r75. Genome Biol. 2012. PMID: 22929540 Free PMC article.
Genomic analysis of benign prostatic hyperplasia implicates cellular re-landscaping in disease pathogenesis.
Middleton LW, Shen Z, Varma S, Pollack AS, Gong X, Zhu S, Zhu C, Foley JW, Vennam S, Sweeney RT, Tu K, Biscocho J, Eminaga O, Nolley R, Tibshirani R, Brooks JD, West RB, Pollack JR. Middleton LW, et al. Among authors: foley jw. JCI Insight. 2019 May 16;5(12):e129749. doi: 10.1172/jci.insight.129749. JCI Insight. 2019. PMID: 31094703 Free PMC article.
Transcriptome and genome evolution during HER2-amplified breast neoplasia.
Lu P, Foley J, Zhu C, McNamara K, Sirinukunwattana K, Vennam S, Varma S, Fehri H, Srivastava A, Zhu S, Rittscher J, Mallick P, Curtis C, West R. Lu P, et al. Breast Cancer Res. 2021 Jul 15;23(1):73. doi: 10.1186/s13058-021-01451-6. Breast Cancer Res. 2021. PMID: 34266469 Free PMC article.
Cost-effective DNA methylation profiling by FML-seq.
Foley JW, Zhu SX, West RB. Foley JW, et al. Life Sci Alliance. 2023 Sep 29;6(12):e202302326. doi: 10.26508/lsa.202302326. Print 2023 Dec. Life Sci Alliance. 2023. PMID: 37775270 Free PMC article.
Cost-effective DNA methylation profiling by FML-seq.
Foley JW, Zhu SX, West RB. Foley JW, et al. bioRxiv [Preprint]. 2023 Jul 17:2023.01.13.523849. doi: 10.1101/2023.01.13.523849. bioRxiv. 2023. PMID: 36711549 Free PMC article. Updated. Preprint.
67 results