Benos PV - Search Results

1

Novel modeling of combinatorial miRNA targeting identifies SNP with potential role in bone density.

Coronnello C, Hartmaier R, Arora A, Huleihel L, Pandit KV, Bais AS, Butterworth M, Kaminski N, Stormo GD, Oesterreich S, Benos PV. Coronnello C, et al. Among authors: benos pv. PLoS Comput Biol. 2012;8(12):e1002830. doi: 10.1371/journal.pcbi.1002830. Epub 2012 Dec 20. PLoS Comput Biol. 2012. PMID: 23284279 Free PMC article.

2

Deep neural networks with knockoff features identify nonlinear causal relations and estimate effect sizes in complex biological systems.

Fan Z, Kernan KF, Sriram A, Benos PV, Canna SW, Carcillo JA, Kim S, Park HJ. Fan Z, et al. Among authors: benos pv. Gigascience. 2022 Dec 28;12:giad044. doi: 10.1093/gigascience/giad044. Epub 2023 Jul 3. Gigascience. 2022. PMID: 37395630 Free PMC article.

3

Is there a code for protein-DNA recognition? Probab(ilistical)ly. .

Benos PV, Lapedes AS, Stormo GD. Benos PV, et al. Bioessays. 2002 May;24(5):466-75. doi: 10.1002/bies.10073. Bioessays. 2002. PMID: 12001270 Review.

4

Additivity in protein-DNA interactions: how good an approximation is it?

Benos PV, Bulyk ML, Stormo GD. Benos PV, et al. Nucleic Acids Res. 2002 Oct 15;30(20):4442-51. doi: 10.1093/nar/gkf578. Nucleic Acids Res. 2002. PMID: 12384591 Free PMC article.

5

Probabilistic code for DNA recognition by proteins of the EGR family.

Benos PV, Lapedes AS, Stormo GD. Benos PV, et al. J Mol Biol. 2002 Nov 1;323(4):701-27. doi: 10.1016/s0022-2836(02)00917-8. J Mol Biol. 2002. PMID: 12419259

6

enoLOGOS: a versatile web tool for energy normalized sequence logos.

Workman CT, Yin Y, Corcoran DL, Ideker T, Stormo GD, Benos PV. Workman CT, et al. Among authors: benos pv. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W389-92. doi: 10.1093/nar/gki439. Nucleic Acids Res. 2005. PMID: 15980495 Free PMC article.

7

Features of mammalian microRNA promoters emerge from polymerase II chromatin immunoprecipitation data.

Corcoran DL, Pandit KV, Gordon B, Bhattacharjee A, Kaminski N, Benos PV. Corcoran DL, et al. Among authors: benos pv. PLoS One. 2009;4(4):e5279. doi: 10.1371/journal.pone.0005279. Epub 2009 Apr 23. PLoS One. 2009. PMID: 19390574 Free PMC article.

8

Inhibition and role of let-7d in idiopathic pulmonary fibrosis.

Pandit KV, Corcoran D, Yousef H, Yarlagadda M, Tzouvelekis A, Gibson KF, Konishi K, Yousem SA, Singh M, Handley D, Richards T, Selman M, Watkins SC, Pardo A, Ben-Yehudah A, Bouros D, Eickelberg O, Ray P, Benos PV, Kaminski N. Pandit KV, et al. Among authors: benos pv. Am J Respir Crit Care Med. 2010 Jul 15;182(2):220-9. doi: 10.1164/rccm.200911-1698OC. Epub 2010 Apr 15. Am J Respir Crit Care Med. 2010. PMID: 20395557 Free PMC article. Clinical Trial.

9

Finding subtypes of transcription factor motif pairs with distinct regulatory roles.

Bais AS, Kaminski N, Benos PV. Bais AS, et al. Among authors: benos pv. Nucleic Acids Res. 2011 Jun;39(11):e76. doi: 10.1093/nar/gkr205. Epub 2011 Apr 12. Nucleic Acids Res. 2011. PMID: 21486752 Free PMC article.

10

High throughput determination of TGFβ1/SMAD3 targets in A549 lung epithelial cells.

Zhang Y, Handley D, Kaplan T, Yu H, Bais AS, Richards T, Pandit KV, Zeng Q, Benos PV, Friedman N, Eickelberg O, Kaminski N. Zhang Y, et al. Among authors: benos pv. PLoS One. 2011;6(5):e20319. doi: 10.1371/journal.pone.0020319. Epub 2011 May 20. PLoS One. 2011. PMID: 21625455 Free PMC article.

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