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The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.
Katayama T, Wilkinson MD, Micklem G, Kawashima S, Yamaguchi A, Nakao M, Yamamoto Y, Okamoto S, Oouchida K, Chun HW, Aerts J, Afzal H, Antezana E, Arakawa K, Aranda B, Belleau F, Bolleman J, Bonnal RJ, Chapman B, Cock PJ, Eriksson T, Gordon PM, Goto N, Hayashi K, Horn H, Ishiwata R, Kaminuma E, Kasprzyk A, Kawaji H, Kido N, Kim YJ, Kinjo AR, Konishi F, Kwon KH, Labarga A, Lamprecht AL, Lin Y, Lindenbaum P, McCarthy L, Morita H, Murakami K, Nagao K, Nishida K, Nishimura K, Nishizawa T, Ogishima S, Ono K, Oshita K, Park KJ, Prins P, Saito TL, Samwald M, Satagopam VP, Shigemoto Y, Smith R, Splendiani A, Sugawara H, Taylor J, Vos RA, Withers D, Yamasaki C, Zmasek CM, Kawamoto S, Okubo K, Asai K, Takagi T. Katayama T, et al. Among authors: satagopam vp. J Biomed Semantics. 2013 Feb 11;4(1):6. doi: 10.1186/2041-1480-4-6. J Biomed Semantics. 2013. PMID: 23398680 Free PMC article.
A draft network of ligand-receptor-mediated multicellular signalling in human.
Ramilowski JA, Goldberg T, Harshbarger J, Kloppmann E, Lizio M, Satagopam VP, Itoh M, Kawaji H, Carninci P, Rost B, Forrest AR. Ramilowski JA, et al. Among authors: satagopam vp. Nat Commun. 2015 Jul 22;6:7866. doi: 10.1038/ncomms8866. Nat Commun. 2015. PMID: 26198319 Free PMC article.
PredictProtein - Predicting Protein Structure and Function for 29 Years.
Bernhofer M, Dallago C, Karl T, Satagopam V, Heinzinger M, Littmann M, Olenyi T, Qiu J, Schütze K, Yachdav G, Ashkenazy H, Ben-Tal N, Bromberg Y, Goldberg T, Kajan L, O'Donoghue S, Sander C, Schafferhans A, Schlessinger A, Vriend G, Mirdita M, Gawron P, Gu W, Jarosz Y, Trefois C, Steinegger M, Schneider R, Rost B. Bernhofer M, et al. Nucleic Acids Res. 2021 Jul 2;49(W1):W535-W540. doi: 10.1093/nar/gkab354. Nucleic Acids Res. 2021. PMID: 33999203 Free PMC article.
nala: text mining natural language mutation mentions.
Cejuela JM, Bojchevski A, Uhlig C, Bekmukhametov R, Kumar Karn S, Mahmuti S, Baghudana A, Dubey A, Satagopam VP, Rost B. Cejuela JM, et al. Among authors: satagopam vp. Bioinformatics. 2017 Jun 15;33(12):1852-1858. doi: 10.1093/bioinformatics/btx083. Bioinformatics. 2017. PMID: 28200120 Free PMC article.
siRNA screen identifies QPCT as a druggable target for Huntington's disease.
Jimenez-Sanchez M, Lam W, Hannus M, Sönnichsen B, Imarisio S, Fleming A, Tarditi A, Menzies F, Dami TE, Xu C, Gonzalez-Couto E, Lazzeroni G, Heitz F, Diamanti D, Massai L, Satagopam VP, Marconi G, Caramelli C, Nencini A, Andreini M, Sardone GL, Caradonna NP, Porcari V, Scali C, Schneider R, Pollio G, O'Kane CJ, Caricasole A, Rubinsztein DC. Jimenez-Sanchez M, et al. Among authors: satagopam vp. Nat Chem Biol. 2015 May;11(5):347-354. doi: 10.1038/nchembio.1790. Epub 2015 Apr 6. Nat Chem Biol. 2015. PMID: 25848931 Free PMC article.
Integrating pathways of Parkinson's disease in a molecular interaction map.
Fujita KA, Ostaszewski M, Matsuoka Y, Ghosh S, Glaab E, Trefois C, Crespo I, Perumal TM, Jurkowski W, Antony PM, Diederich N, Buttini M, Kodama A, Satagopam VP, Eifes S, Del Sol A, Schneider R, Kitano H, Balling R. Fujita KA, et al. Among authors: satagopam vp. Mol Neurobiol. 2014 Feb;49(1):88-102. doi: 10.1007/s12035-013-8489-4. Epub 2013 Jul 7. Mol Neurobiol. 2014. PMID: 23832570 Free PMC article. Review.
Martini: using literature keywords to compare gene sets.
Soldatos TG, O'Donoghue SI, Satagopam VP, Jensen LJ, Brown NP, Barbosa-Silva A, Schneider R. Soldatos TG, et al. Among authors: satagopam vp. Nucleic Acids Res. 2010 Jan;38(1):26-38. doi: 10.1093/nar/gkp876. Epub 2009 Oct 25. Nucleic Acids Res. 2010. PMID: 19858102 Free PMC article.
56 results