Krucinska J - Search Results

1

Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold.

Liberman JA, Salim M, Krucinska J, Wedekind JE. Liberman JA, et al. Among authors: krucinska j. Nat Chem Biol. 2013 Jun;9(6):353-5. doi: 10.1038/nchembio.1231. Epub 2013 Apr 14. Nat Chem Biol. 2013. PMID: 23584677 Free PMC article.

2

The structural basis for recognition of the PreQ0 metabolite by an unusually small riboswitch aptamer domain.

Spitale RC, Torelli AT, Krucinska J, Bandarian V, Wedekind JE. Spitale RC, et al. Among authors: krucinska j. J Biol Chem. 2009 Apr 24;284(17):11012-6. doi: 10.1074/jbc.C900024200. Epub 2009 Mar 4. J Biol Chem. 2009. PMID: 19261617 Free PMC article.

3

Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation.

Jenkins JL, Krucinska J, McCarty RM, Bandarian V, Wedekind JE. Jenkins JL, et al. Among authors: krucinska j. J Biol Chem. 2011 Jul 15;286(28):24626-37. doi: 10.1074/jbc.M111.230375. Epub 2011 May 18. J Biol Chem. 2011. PMID: 21592962 Free PMC article.

4

Crystallographic analysis of small ribozymes and riboswitches.

Lippa GM, Liberman JA, Jenkins JL, Krucinska J, Salim M, Wedekind JE. Lippa GM, et al. Among authors: krucinska j. Methods Mol Biol. 2012;848:159-84. doi: 10.1007/978-1-61779-545-9_11. Methods Mol Biol. 2012. PMID: 22315069 Free PMC article.

5

A transition-state interaction shifts nucleobase ionization toward neutrality to facilitate small ribozyme catalysis.

Liberman JA, Guo M, Jenkins JL, Krucinska J, Chen Y, Carey PR, Wedekind JE. Liberman JA, et al. Among authors: krucinska j. J Am Chem Soc. 2012 Oct 17;134(41):16933-6. doi: 10.1021/ja3070528. Epub 2012 Oct 3. J Am Chem Soc. 2012. PMID: 22989273 Free PMC article.

6

Conformational heterogeneity at position U37 of an all-RNA hairpin ribozyme with implications for metal binding and the catalytic structure of the S-turn.

Alam S, Grum-Tokars V, Krucinska J, Kundracik ML, Wedekind JE. Alam S, et al. Among authors: krucinska j. Biochemistry. 2005 Nov 8;44(44):14396-408. doi: 10.1021/bi051550i. Biochemistry. 2005. PMID: 16262240

7

Water in the active site of an all-RNA hairpin ribozyme and effects of Gua8 base variants on the geometry of phosphoryl transfer.

Salter J, Krucinska J, Alam S, Grum-Tokars V, Wedekind JE. Salter J, et al. Among authors: krucinska j. Biochemistry. 2006 Jan 24;45(3):686-700. doi: 10.1021/bi051887k. Biochemistry. 2006. PMID: 16411744 Free PMC article.

8

A comparison of vanadate to a 2'-5' linkage at the active site of a small ribozyme suggests a role for water in transition-state stabilization.

Torelli AT, Krucinska J, Wedekind JE. Torelli AT, et al. Among authors: krucinska j. RNA. 2007 Jul;13(7):1052-70. doi: 10.1261/rna.510807. Epub 2007 May 8. RNA. 2007. PMID: 17488874 Free PMC article.

9

A posteriori design of crystal contacts to improve the X-ray diffraction properties of a small RNA enzyme.

MacElrevey C, Spitale RC, Krucinska J, Wedekind JE. MacElrevey C, et al. Among authors: krucinska j. Acta Crystallogr D Biol Crystallogr. 2007 Jul;63(Pt 7):812-25. doi: 10.1107/S090744490702464X. Epub 2007 Jun 15. Acta Crystallogr D Biol Crystallogr. 2007. PMID: 17582172 Free PMC article.

10

Shared traits on the reaction coordinates of ribonuclease and an RNA enzyme.

Torelli AT, Spitale RC, Krucinska J, Wedekind JE. Torelli AT, et al. Among authors: krucinska j. Biochem Biophys Res Commun. 2008 Jun 20;371(1):154-8. doi: 10.1016/j.bbrc.2008.04.036. Epub 2008 Apr 16. Biochem Biophys Res Commun. 2008. PMID: 18423397 Free PMC article.

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