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Arpeggio: harmonic compression of ChIP-seq data reveals protein-chromatin interaction signatures.
Nucleic Acids Res. 2013 Sep;41(16):e161. doi: 10.1093/nar/gkt627. Epub 2013 Jul 19.
Nucleic Acids Res. 2013.
PMID: 23873955
Free PMC article.
Ritornello: high fidelity control-free chromatin immunoprecipitation peak calling.
Stanton KP, Jin J, Lederman RR, Weissman SM, Kluger Y.
Stanton KP, et al.
Nucleic Acids Res. 2017 Dec 1;45(21):e173. doi: 10.1093/nar/gkx799.
Nucleic Acids Res. 2017.
PMID: 28981893
Free PMC article.
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Gating mass cytometry data by deep learning.
Li H, Shaham U, Stanton KP, Yao Y, Montgomery RR, Kluger Y.
Li H, et al. Among authors: stanton kp.
Bioinformatics. 2017 Nov 1;33(21):3423-3430. doi: 10.1093/bioinformatics/btx448.
Bioinformatics. 2017.
PMID: 29036374
Free PMC article.
Item in Clipboard
Removal of batch effects using distribution-matching residual networks.
Shaham U, Stanton KP, Zhao J, Li H, Raddassi K, Montgomery R, Kluger Y.
Shaham U, et al. Among authors: stanton kp.
Bioinformatics. 2017 Aug 15;33(16):2539-2546. doi: 10.1093/bioinformatics/btx196.
Bioinformatics. 2017.
PMID: 28419223
Free PMC article.
Item in Clipboard
Algorithm 971: An Implementation of a Randomized Algorithm for Principal Component Analysis.
Li H, Linderman GC, Szlam A, Stanton KP, Kluger Y, Tygert M.
Li H, et al. Among authors: stanton kp.
ACM Trans Math Softw. 2017 Jan;43(3):28. doi: 10.1145/3004053.
ACM Trans Math Softw. 2017.
PMID: 28983138
Free PMC article.
Item in Clipboard
Multiplexed (18-Plex) Measurement of Signaling Targets and Cytotoxic T Cells in Trastuzumab-Treated Patients using Imaging Mass Cytometry.
Carvajal-Hausdorf DE, Patsenker J, Stanton KP, Villarroel-Espindola F, Esch A, Montgomery RR, Psyrri A, Kalogeras KT, Kotoula V, Foutzilas G, Schalper KA, Kluger Y, Rimm DL.
Carvajal-Hausdorf DE, et al. Among authors: stanton kp.
Clin Cancer Res. 2019 May 15;25(10):3054-3062. doi: 10.1158/1078-0432.CCR-18-2599. Epub 2019 Feb 22.
Clin Cancer Res. 2019.
PMID: 30796036
Free PMC article.
Clinical Trial.
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Efficient Propagation of Circulating Tumor Cells: A First Step for Probing Tumor Metastasis.
Xiao J, McGill JR, Stanton K, Kassner JD, Choudhury S, Schlegel R, Sauna ZE, Pohlmann PR, Agarwal S.
Xiao J, et al.
Cancers (Basel). 2020 Sep 28;12(10):2784. doi: 10.3390/cancers12102784.
Cancers (Basel). 2020.
PMID: 32998338
Free PMC article.
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