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RNA-Seq alignment to individualized genomes improves transcript abundance estimates in multiparent populations.
Genetics. 2014 Sep;198(1):59-73. doi: 10.1534/genetics.114.165886.
Genetics. 2014.
PMID: 25236449
Free PMC article.
Canonical A-to-I and C-to-U RNA editing is enriched at 3'UTRs and microRNA target sites in multiple mouse tissues.
Gu T, Buaas FW, Simons AK, Ackert-Bicknell CL, Braun RE, Hibbs MA.
Gu T, et al. Among authors: simons ak.
PLoS One. 2012;7(3):e33720. doi: 10.1371/journal.pone.0033720. Epub 2012 Mar 20.
PLoS One. 2012.
PMID: 22448268
Free PMC article.
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Cell-type-specific predictive network yields novel insights into mouse embryonic stem cell self-renewal and cell fate.
Dowell KG, Simons AK, Wang ZZ, Yun K, Hibbs MA.
Dowell KG, et al. Among authors: simons ak.
PLoS One. 2013;8(2):e56810. doi: 10.1371/journal.pone.0056810. Epub 2013 Feb 28.
PLoS One. 2013.
PMID: 23468881
Free PMC article.
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Novel insights into embryonic stem cell self-renewal revealed through comparative human and mouse systems biology networks.
Dowell KG, Simons AK, Bai H, Kell B, Wang ZZ, Yun K, Hibbs MA.
Dowell KG, et al. Among authors: simons ak.
Stem Cells. 2014 May;32(5):1161-72. doi: 10.1002/stem.1612.
Stem Cells. 2014.
PMID: 24307629
Free PMC article.
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A Genomically and Clinically Annotated Patient-Derived Xenograft Resource for Preclinical Research in Non-Small Cell Lung Cancer.
Woo XY, Srivastava A, Mack PC, Graber JH, Sanderson BJ, Lloyd MW, Chen M, Domanskyi S, Gandour-Edwards R, Tsai RA, Keck J, Cheng M, Bundy M, Jocoy EL, Riess JW, Holland W, Grubb SC, Peterson JG, Stafford GA, Paisie C, Neuhauser SB, Karuturi RKM, George J, Simons AK, Chavaree M, Tepper CG, Goodwin N, Airhart SD, Lara PN, Openshaw TH, Liu ET, Gandara DR, Bult CJ.
Woo XY, et al. Among authors: simons ak.
Cancer Res. 2022 Nov 15;82(22):4126-4138. doi: 10.1158/0008-5472.CAN-22-0948.
Cancer Res. 2022.
PMID: 36069866
Free PMC article.
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