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Genome3D: exploiting structure to help users understand their sequences.
Lewis TE, Sillitoe I, Andreeva A, Blundell TL, Buchan DW, Chothia C, Cozzetto D, Dana JM, Filippis I, Gough J, Jones DT, Kelley LA, Kleywegt GJ, Minneci F, Mistry J, Murzin AG, Ochoa-Montaño B, Oates ME, Punta M, Rackham OJ, Stahlhacke J, Sternberg MJ, Velankar S, Orengo C. Lewis TE, et al. Among authors: rackham oj. Nucleic Acids Res. 2015 Jan;43(Database issue):D382-6. doi: 10.1093/nar/gku973. Epub 2014 Oct 27. Nucleic Acids Res. 2015. PMID: 25348407 Free PMC article.
SUPERFAMILY 1.75 including a domain-centric gene ontology method.
de Lima Morais DA, Fang H, Rackham OJ, Wilson D, Pethica R, Chothia C, Gough J. de Lima Morais DA, et al. Among authors: rackham oj. Nucleic Acids Res. 2011 Jan;39(Database issue):D427-34. doi: 10.1093/nar/gkq1130. Epub 2010 Nov 9. Nucleic Acids Res. 2011. PMID: 21062816 Free PMC article.
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.
Lewis TE, Sillitoe I, Andreeva A, Blundell TL, Buchan DW, Chothia C, Cuff A, Dana JM, Filippis I, Gough J, Hunter S, Jones DT, Kelley LA, Kleywegt GJ, Minneci F, Mitchell A, Murzin AG, Ochoa-Montaño B, Rackham OJ, Smith J, Sternberg MJ, Velankar S, Yeats C, Orengo C. Lewis TE, et al. Among authors: rackham oj. Nucleic Acids Res. 2013 Jan;41(Database issue):D499-507. doi: 10.1093/nar/gks1266. Epub 2012 Nov 30. Nucleic Acids Res. 2013. PMID: 23203986 Free PMC article.
The SUPERFAMILY 1.75 database in 2014: a doubling of data.
Oates ME, Stahlhacke J, Vavoulis DV, Smithers B, Rackham OJ, Sardar AJ, Zaucha J, Thurlby N, Fang H, Gough J. Oates ME, et al. Among authors: rackham oj. Nucleic Acids Res. 2015 Jan;43(Database issue):D227-33. doi: 10.1093/nar/gku1041. Epub 2014 Nov 20. Nucleic Acids Res. 2015. PMID: 25414345 Free PMC article.
A proteome quality index.
Zaucha J, Stahlhacke J, Oates ME, Thurlby N, Rackham OJ, Fang H, Smithers B, Gough J. Zaucha J, et al. Among authors: rackham oj. Environ Microbiol. 2015 Jan;17(1):4-9. doi: 10.1111/1462-2920.12622. Epub 2014 Oct 22. Environ Microbiol. 2015. PMID: 25339269 Free article.
The evolution of human cells in terms of protein innovation.
Sardar AJ, Oates ME, Fang H, Forrest AR, Kawaji H; FANTOM Consortium; Gough J, Rackham OJ. Sardar AJ, et al. Among authors: rackham oj. Mol Biol Evol. 2014 Jun;31(6):1364-74. doi: 10.1093/molbev/mst139. Epub 2014 Apr 1. Mol Biol Evol. 2014. PMID: 24692656 Free PMC article.
71 results