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Decoupling of the PI3K Pathway via Mutation Necessitates Combinatorial Treatment in HER2+ Breast Cancer.
Korkola JE, Collisson EA, Heiser M, Oates C, Bayani N, Itani S, Esch A, Thompson W, Griffith OL, Wang NJ, Kuo WL, Cooper B, Billig J, Ziyad S, Hung JL, Jakkula L, Feiler H, Lu Y, Mills GB, Spellman PT, Tomlin C, Mukherjee S, Gray JW. Korkola JE, et al. Among authors: mukherjee s. PLoS One. 2015 Jul 16;10(7):e0133219. doi: 10.1371/journal.pone.0133219. eCollection 2015. PLoS One. 2015. PMID: 26181325 Free PMC article.
Bayesian inference of signaling network topology in a cancer cell line.
Hill SM, Lu Y, Molina J, Heiser LM, Spellman PT, Speed TP, Gray JW, Mills GB, Mukherjee S. Hill SM, et al. Among authors: mukherjee s. Bioinformatics. 2012 Nov 1;28(21):2804-10. doi: 10.1093/bioinformatics/bts514. Epub 2012 Aug 24. Bioinformatics. 2012. PMID: 22923301 Free PMC article.
Causal network inference using biochemical kinetics.
Oates CJ, Dondelinger F, Bayani N, Korkola J, Gray JW, Mukherjee S. Oates CJ, et al. Among authors: mukherjee s. Bioinformatics. 2014 Sep 1;30(17):i468-74. doi: 10.1093/bioinformatics/btu452. Bioinformatics. 2014. PMID: 25161235 Free PMC article.
Context Specificity in Causal Signaling Networks Revealed by Phosphoprotein Profiling.
Hill SM, Nesser NK, Johnson-Camacho K, Jeffress M, Johnson A, Boniface C, Spencer SE, Lu Y, Heiser LM, Lawrence Y, Pande NT, Korkola JE, Gray JW, Mills GB, Mukherjee S, Spellman PT. Hill SM, et al. Among authors: mukherjee s. Cell Syst. 2017 Jan 25;4(1):73-83.e10. doi: 10.1016/j.cels.2016.11.013. Epub 2016 Dec 22. Cell Syst. 2017. PMID: 28017544 Free PMC article.
Correction: Decoupling of the PI3K Pathway via Mutation Necessitates Combinatorial Treatment in HER2+ Breast Cancer.
Korkola JE, Collisson EA, Heiser LM, Oates C, Bayani N, Itani S, Esch A, Thompson W, Griffith OL, Wang NJ, Kuo WL, Cooper B, Billig J, Ziyad S, Hung JL, Jakkula L, Feiler H, Lu Y, Mills GB, Spellman PT, Tomlin C, Mukherjee S, Gray JW. Korkola JE, et al. Among authors: mukherjee s. PLoS One. 2017 Oct 11;12(10):e0186551. doi: 10.1371/journal.pone.0186551. eCollection 2017. PLoS One. 2017. PMID: 29020035 Free PMC article.
Network Inference and Biological Dynamics.
Oates CJ, Mukherjee S. Oates CJ, et al. Among authors: mukherjee s. Ann Appl Stat. 2012 Sep;6(3):1209-1235. doi: 10.1214/11-AOAS532. Ann Appl Stat. 2012. PMID: 23284600 Free PMC article.
Sparse combinatorial inference with an application in cancer biology.
Mukherjee S, Pelech S, Neve RM, Kuo WL, Ziyad S, Spellman PT, Gray JW, Speed TP. Mukherjee S, et al. Bioinformatics. 2009 Jan 15;25(2):265-71. doi: 10.1093/bioinformatics/btn611. Epub 2008 Nov 27. Bioinformatics. 2009. PMID: 19038985 Free PMC article.
Network inference using steady-state data and Goldbeter-Koshland kinetics. [corrected].
Oates CJ, Hennessy BT, Lu Y, Mills GB, Mukherjee S. Oates CJ, et al. Among authors: mukherjee s. Bioinformatics. 2012 Sep 15;28(18):2342-8. doi: 10.1093/bioinformatics/bts459. Epub 2012 Jul 19. Bioinformatics. 2012. PMID: 22815361 Free PMC article.
AVAILABILITY: mukherjeelab.nki.nl/CODE/GK_Kinetics.zip CONTACT: c.j.oates@warwick.ac.uk; s.mukherjee@nki.nl SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online....
AVAILABILITY: mukherjeelab.nki.nl/CODE/GK_Kinetics.zip CONTACT: c.j.oates@warwick.ac.uk; s.mukherjee@nki.nl SUPPLEMENTARY INFO …
Single-cell states in the estrogen response of breast cancer cell lines.
Casale FP, Giurato G, Nassa G, Armond JW, Oates CJ, Corá D, Gamba A, Mukherjee S, Weisz A, Nicodemi M. Casale FP, et al. Among authors: mukherjee s. PLoS One. 2014 Feb 25;9(2):e88485. doi: 10.1371/journal.pone.0088485. eCollection 2014. PLoS One. 2014. PMID: 24586334 Free PMC article.
6,618 results