Song L - Search Results

1

Genetic variants and cellular stressors associated with exfoliation syndrome modulate promoter activity of a lncRNA within the LOXL1 locus.

Hauser MA, Aboobakar IF, Liu Y, Miura S, Whigham BT, Challa P, Wheeler J, Williams A, Santiago-Turla C, Qin X, Rautenbach RM, Ziskind A, Ramsay M, Uebe S, Song L, Safi A, Vithana EN, Mizoguchi T, Nakano S, Kubota T, Hayashi K, Manabe S, Kazama S, Mori Y, Miyata K, Yoshimura N, Reis A, Crawford GE, Pasutto F, Carmichael TR, Williams SE, Ozaki M, Aung T, Khor CC, Stamer WD, Ashley-Koch AE, Allingham RR. Hauser MA, et al. Among authors: song l. Hum Mol Genet. 2015 Nov 15;24(22):6552-63. doi: 10.1093/hmg/ddv347. Epub 2015 Aug 25. Hum Mol Genet. 2015. PMID: 26307087 Free PMC article.

2

DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells.

Song L, Crawford GE. Song L, et al. Cold Spring Harb Protoc. 2010 Feb;2010(2):pdb.prot5384. doi: 10.1101/pdb.prot5384. Cold Spring Harb Protoc. 2010. PMID: 20150147 Free PMC article. No abstract available.

3

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells.

Boyle AP, Song L, Lee BK, London D, Keefe D, Birney E, Iyer VR, Crawford GE, Furey TS. Boyle AP, et al. Among authors: song l. Genome Res. 2011 Mar;21(3):456-64. doi: 10.1101/gr.112656.110. Epub 2010 Nov 24. Genome Res. 2011. PMID: 21106903 Free PMC article.

4

A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function.

Bischof JM, Ott CJ, Leir SH, Gosalia N, Song L, London D, Furey TS, Cotton CU, Crawford GE, Harris A. Bischof JM, et al. Among authors: song l. Thorax. 2012 May;67(5):385-91. doi: 10.1136/thoraxjnl-2011-200880. Epub 2011 Dec 14. Thorax. 2012. PMID: 22169360 Free PMC article.

5

Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.

Shibata Y, Sheffield NC, Fedrigo O, Babbitt CC, Wortham M, Tewari AK, London D, Song L, Lee BK, Iyer VR, Parker SC, Margulies EH, Wray GA, Furey TS, Crawford GE. Shibata Y, et al. Among authors: song l. PLoS Genet. 2012 Jun;8(6):e1002789. doi: 10.1371/journal.pgen.1002789. Epub 2012 Jun 28. PLoS Genet. 2012. PMID: 22761590 Free PMC article.

6

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.

Sheffield NC, Thurman RE, Song L, Safi A, Stamatoyannopoulos JA, Lenhard B, Crawford GE, Furey TS. Sheffield NC, et al. Among authors: song l. Genome Res. 2013 May;23(5):777-88. doi: 10.1101/gr.152140.112. Epub 2013 Mar 12. Genome Res. 2013. PMID: 23482648 Free PMC article.

7

DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types.

Winter DR, Song L, Mukherjee S, Furey TS, Crawford GE. Winter DR, et al. Among authors: song l. Genome Res. 2013 Jul;23(7):1118-29. doi: 10.1101/gr.150482.112. Epub 2013 May 8. Genome Res. 2013. PMID: 23657885 Free PMC article.

8

A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals candidate regulatory elements for genes coordinating epididymal function.

Bischof JM, Gillen AE, Song L, Gosalia N, London D, Furey TS, Crawford GE, Harris A. Bischof JM, et al. Among authors: song l. Biol Reprod. 2013 Oct 31;89(4):104. doi: 10.1095/biolreprod.113.110403. Print 2013 Oct. Biol Reprod. 2013. PMID: 24006278 Free PMC article.

9

Notch signaling genes: myogenic DNA hypomethylation and 5-hydroxymethylcytosine.

Terragni J, Zhang G, Sun Z, Pradhan S, Song L, Crawford GE, Lacey M, Ehrlich M. Terragni J, et al. Among authors: song l. Epigenetics. 2014 Jun;9(6):842-50. doi: 10.4161/epi.28597. Epub 2014 Mar 26. Epigenetics. 2014. PMID: 24670287 Free PMC article.

10

Open chromatin mapping identifies transcriptional networks regulating human epididymis epithelial function.

Browne JA, Yang R, Song L, Crawford GE, Leir SH, Harris A. Browne JA, et al. Among authors: song l. Mol Hum Reprod. 2014 Dec;20(12):1198-207. doi: 10.1093/molehr/gau075. Epub 2014 Sep 1. Mol Hum Reprod. 2014. PMID: 25180270 Free PMC article.

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