Dutilh BE - Search Results

1

Dispersion of the HIV-1 Epidemic in Men Who Have Sex with Men in the Netherlands: A Combined Mathematical Model and Phylogenetic Analysis.

Bezemer D, Cori A, Ratmann O, van Sighem A, Hermanides HS, Dutilh BE, Gras L, Rodrigues Faria N, van den Hengel R, Duits AJ, Reiss P, de Wolf F, Fraser C; ATHENA observational cohort. Bezemer D, et al. Among authors: dutilh be. PLoS Med. 2015 Nov 3;12(11):e1001898; discussion e1001898. doi: 10.1371/journal.pmed.1001898. eCollection 2015 Nov. PLoS Med. 2015. PMID: 26529093 Free PMC article.

2

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis.

Ruesen C, Chaidir L, van Laarhoven A, Dian S, Ganiem AR, Nebenzahl-Guimaraes H, Huynen MA, Alisjahbana B, Dutilh BE, van Crevel R. Ruesen C, et al. Among authors: dutilh be. BMC Genomics. 2018 Feb 5;19(1):122. doi: 10.1186/s12864-018-4498-z. BMC Genomics. 2018. PMID: 29402222 Free PMC article.

3

Assessment of phylogenomic and orthology approaches for phylogenetic inference.

Dutilh BE, van Noort V, van der Heijden RT, Boekhout T, Snel B, Huynen MA. Dutilh BE, et al. Bioinformatics. 2007 Apr 1;23(7):815-24. doi: 10.1093/bioinformatics/btm015. Epub 2007 Jan 19. Bioinformatics. 2007. PMID: 17237036

4

Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution.

Kensche PR, van Noort V, Dutilh BE, Huynen MA. Kensche PR, et al. Among authors: dutilh be. J R Soc Interface. 2008 Feb 6;5(19):151-70. doi: 10.1098/rsif.2007.1047. J R Soc Interface. 2008. PMID: 17535793 Free PMC article. Review.

5

Use of whole-genome sequencing to predict Mycobacterium tuberculosis drug resistance in Indonesia.

Chaidir L, Ruesen C, Dutilh BE, Ganiem AR, Andryani A, Apriani L, Huynen MA, Ruslami R, Hill PC, van Crevel R, Alisjahbana B. Chaidir L, et al. Among authors: dutilh be. J Glob Antimicrob Resist. 2019 Mar;16:170-177. doi: 10.1016/j.jgar.2018.08.018. Epub 2018 Aug 29. J Glob Antimicrob Resist. 2019. PMID: 30172045

6

From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems.

Garza DR, Dutilh BE. Garza DR, et al. Among authors: dutilh be. Cell Mol Life Sci. 2015 Nov;72(22):4287-308. doi: 10.1007/s00018-015-2004-1. Epub 2015 Aug 9. Cell Mol Life Sci. 2015. PMID: 26254872 Free PMC article. Review.

7

Reply to: Caution in inferring viral strategies from abundance correlations in marine metagenomes.

Coutinho FH, Silveira CB, Gregoracci GB, Thompson CC, Edwards RA, Brussaard CPD, Dutilh BE, Thompson FL. Coutinho FH, et al. Among authors: dutilh be. Nat Commun. 2019 Jan 30;10(1):502. doi: 10.1038/s41467-018-08286-4. Nat Commun. 2019. PMID: 30700713 Free PMC article. No abstract available.

8

Temporal dynamics of uncultured viruses: a new dimension in viral diversity.

Arkhipova K, Skvortsov T, Quinn JP, McGrath JW, Allen CC, Dutilh BE, McElarney Y, Kulakov LA. Arkhipova K, et al. Among authors: dutilh be. ISME J. 2018 Jan;12(1):199-211. doi: 10.1038/ismej.2017.157. Epub 2017 Oct 13. ISME J. 2018. PMID: 29027998 Free PMC article.

9

Signature genes as a phylogenomic tool.

Dutilh BE, Snel B, Ettema TJ, Huynen MA. Dutilh BE, et al. Mol Biol Evol. 2008 Aug;25(8):1659-67. doi: 10.1093/molbev/msn115. Epub 2008 May 19. Mol Biol Evol. 2008. PMID: 18492663 Free PMC article.

10

Ecogenomics and Taxonomy of Cyanobacteria Phylum.

Walter JM, Coutinho FH, Dutilh BE, Swings J, Thompson FL, Thompson CC. Walter JM, et al. Among authors: dutilh be. Front Microbiol. 2017 Nov 14;8:2132. doi: 10.3389/fmicb.2017.02132. eCollection 2017. Front Microbiol. 2017. PMID: 29184540 Free PMC article.

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