Li B - Search Results

1

Using SVD on Clusters to Improve Precision of Interdocument Similarity Measure.

Zhang W, Xiao F, Li B, Zhang S. Zhang W, et al. Among authors: li b. Comput Intell Neurosci. 2016;2016:1096271. doi: 10.1155/2016/1096271. Epub 2016 Aug 7. Comput Intell Neurosci. 2016. PMID: 27579031 Free PMC article.

2

ATAC-pipe: general analysis of genome-wide chromatin accessibility.

Zuo Z, Jin Y, Zhang W, Lu Y, Li B, Qu K. Zuo Z, et al. Among authors: li b. Brief Bioinform. 2019 Sep 27;20(5):1934-1943. doi: 10.1093/bib/bby056. Brief Bioinform. 2019. PMID: 29982337

3

Comprehensive TCR repertoire analysis of CD4⁺ T-cell subsets in rheumatoid arthritis.

Jiang X, Wang S, Zhou C, Wu J, Jiao Y, Lin L, Lu X, Yang B, Zhang W, Xiao X, Li Y, Wu X, Wang X, Chen H, Zhao L, Fei Y, Yang H, Zhang W, Zhang F, Chen H, Zhang J, Li B, Yang H, Wang J, Liu X, Zhang X. Jiang X, et al. Among authors: li y, li b. J Autoimmun. 2020 May;109:102432. doi: 10.1016/j.jaut.2020.102432. Epub 2020 Feb 27. J Autoimmun. 2020. PMID: 32115259

4

APEC: an accesson-based method for single-cell chromatin accessibility analysis.

Li B, Li Y, Li K, Zhu L, Yu Q, Cai P, Fang J, Zhang W, Du P, Jiang C, Lin J, Qu K. Li B, et al. Among authors: li y, li k. Genome Biol. 2020 May 12;21(1):116. doi: 10.1186/s13059-020-02034-y. Genome Biol. 2020. PMID: 32398051 Free PMC article.

5

Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm.

Guo C, Li B, Ma H, Wang X, Cai P, Yu Q, Zhu L, Jin L, Jiang C, Fang J, Liu Q, Zong D, Zhang W, Lu Y, Li K, Gao X, Fu B, Liu L, Ma X, Weng J, Wei H, Jin T, Lin J, Qu K. Guo C, et al. Among authors: li k, li b. Nat Commun. 2020 Aug 6;11(1):3924. doi: 10.1038/s41467-020-17834-w. Nat Commun. 2020. PMID: 32764665 Free PMC article.

6

WEDGE: imputation of gene expression values from single-cell RNA-seq datasets using biased matrix decomposition.

Hu Y, Li B, Zhang W, Liu N, Cai P, Chen F, Qu K. Hu Y, et al. Among authors: li b. Brief Bioinform. 2021 Sep 2;22(5):bbab085. doi: 10.1093/bib/bbab085. Brief Bioinform. 2021. PMID: 33834202

7

Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolution.

Li B, Zhang W, Guo C, Xu H, Li L, Fang M, Hu Y, Zhang X, Yao X, Tang M, Liu K, Zhao X, Lin J, Cheng L, Chen F, Xue T, Qu K. Li B, et al. Among authors: li l. Nat Methods. 2022 Jun;19(6):662-670. doi: 10.1038/s41592-022-01480-9. Epub 2022 May 16. Nat Methods. 2022. PMID: 35577954

8

Comparative Physiological and Proteomic Analyses Reveal the Mechanisms of Brassinolide-Mediated Tolerance to Calcium Nitrate Stress in Tomato.

Zhang Y, Chen H, Li S, Li Y, Kanwar MK, Li B, Bai L, Xu J, Shi Y. Zhang Y, et al. Among authors: li s, li y, li b. Front Plant Sci. 2021 Nov 17;12:724288. doi: 10.3389/fpls.2021.724288. eCollection 2021. Front Plant Sci. 2021. PMID: 34868110 Free PMC article.

9

SPACEL: deep learning-based characterization of spatial transcriptome architectures.

Xu H, Wang S, Fang M, Luo S, Chen C, Wan S, Wang R, Tang M, Xue T, Li B, Lin J, Qu K. Xu H, et al. Among authors: li b. Nat Commun. 2023 Nov 22;14(1):7603. doi: 10.1038/s41467-023-43220-3. Nat Commun. 2023. PMID: 37990022 Free PMC article.

10

Comprehensive characterization of plasma cell-free Echinococcus spp. DNA in echinococcosis patients using ultra-high-throughput sequencing.

Ji J, Li B, Li J, Danzeng W, Li J, Zhao Y, Qiangba G, Zhang Q, Renzhen N, Basang Z, Jia C, Gongsang Q, Ma J, Wang Y, Chen F, Zhou H, Huasang, Yin J, Xie J, Pei N, Cai H, Jiang H, Yang H, Wang J, Asan, Han X, Li J, Chen W, Yang D. Ji J, et al. Among authors: li j, li b. PLoS Negl Trop Dis. 2020 Apr 13;14(4):e0008148. doi: 10.1371/journal.pntd.0008148. eCollection 2020 Apr. PLoS Negl Trop Dis. 2020. PMID: 32282820 Free PMC article.

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