Proost S - Search Results

1

Beyond Genomics: Studying Evolution with Gene Coexpression Networks.

Ruprecht C, Vaid N, Proost S, Persson S, Mutwil M. Ruprecht C, et al. Among authors: proost s. Trends Plant Sci. 2017 Apr;22(4):298-307. doi: 10.1016/j.tplants.2016.12.011. Epub 2017 Jan 23. Trends Plant Sci. 2017. PMID: 28126286 Review.

2

Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules.

Ruprecht C, Proost S, Hernandez-Coronado M, Ortiz-Ramirez C, Lang D, Rensing SA, Becker JD, Vandepoele K, Mutwil M. Ruprecht C, et al. Among authors: proost s. Plant J. 2017 May;90(3):447-465. doi: 10.1111/tpj.13502. Epub 2017 Mar 23. Plant J. 2017. PMID: 28161902 Free article.

3

Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon.

Sibout R, Proost S, Hansen BO, Vaid N, Giorgi FM, Ho-Yue-Kuang S, Legée F, Cézart L, Bouchabké-Coussa O, Soulhat C, Provart N, Pasha A, Le Bris P, Roujol D, Hofte H, Jamet E, Lapierre C, Persson S, Mutwil M. Sibout R, et al. Among authors: proost s. New Phytol. 2017 Aug;215(3):1009-1025. doi: 10.1111/nph.14635. Epub 2017 Jun 15. New Phytol. 2017. PMID: 28617955 Free article.

4

CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses.

Proost S, Mutwil M. Proost S, et al. Nucleic Acids Res. 2018 Jul 2;46(W1):W133-W140. doi: 10.1093/nar/gky336. Nucleic Acids Res. 2018. PMID: 29718322 Free PMC article.

5

Tools of the trade: studying molecular networks in plants.

Proost S, Mutwil M. Proost S, et al. Curr Opin Plant Biol. 2016 Apr;30:143-50. doi: 10.1016/j.pbi.2016.02.010. Epub 2016 Mar 15. Curr Opin Plant Biol. 2016. PMID: 26990519 Review.

6

PlaNet: Comparative Co-Expression Network Analyses for Plants.

Proost S, Mutwil M. Proost S, et al. Methods Mol Biol. 2017;1533:213-227. doi: 10.1007/978-1-4939-6658-5_12. Methods Mol Biol. 2017. PMID: 27987173

7

LSTrAP: efficiently combining RNA sequencing data into co-expression networks.

Proost S, Krawczyk A, Mutwil M. Proost S, et al. BMC Bioinformatics. 2017 Oct 10;18(1):444. doi: 10.1186/s12859-017-1861-z. BMC Bioinformatics. 2017. PMID: 29017446 Free PMC article.

8

PhytoNet: comparative co-expression network analyses across phytoplankton and land plants.

Ferrari C, Proost S, Ruprecht C, Mutwil M. Ferrari C, et al. Among authors: proost s. Nucleic Acids Res. 2018 Jul 2;46(W1):W76-W83. doi: 10.1093/nar/gky298. Nucleic Acids Res. 2018. PMID: 29718316 Free PMC article.

9

Transcriptomics of manually isolated Amborella trichopoda egg apparatus cells.

Flores-Tornero M, Proost S, Mutwil M, Scutt CP, Dresselhaus T, Sprunck S. Flores-Tornero M, et al. Among authors: proost s. Plant Reprod. 2019 Mar;32(1):15-27. doi: 10.1007/s00497-019-00361-0. Epub 2019 Feb 1. Plant Reprod. 2019. PMID: 30707279

10

Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida.

Ferrari C, Proost S, Janowski M, Becker J, Nikoloski Z, Bhattacharya D, Price D, Tohge T, Bar-Even A, Fernie A, Stitt M, Mutwil M. Ferrari C, et al. Among authors: proost s. Nat Commun. 2019 Feb 13;10(1):737. doi: 10.1038/s41467-019-08703-2. Nat Commun. 2019. PMID: 30760717 Free PMC article.

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