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Parental-to-embryo switch of chromosome organization in early embryogenesis.
Collombet S, Ranisavljevic N, Nagano T, Varnai C, Shisode T, Leung W, Piolot T, Galupa R, Borensztein M, Servant N, Fraser P, Ancelin K, Heard E. Collombet S, et al. Among authors: varnai c. Nature. 2020 Apr;580(7801):142-146. doi: 10.1038/s41586-020-2125-z. Epub 2020 Mar 25. Nature. 2020. PMID: 32238933
Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells.
Koohy H, Bolland DJ, Matheson LS, Schoenfelder S, Stellato C, Dimond A, Várnai C, Chovanec P, Chessa T, Denizot J, Manzano Garcia R, Wingett SW, Freire-Pritchett P, Nagano T, Hawkins P, Stephens L, Elderkin S, Spivakov M, Fraser P, Corcoran AE, Varga-Weisz PD. Koohy H, et al. Among authors: varnai c. Genome Biol. 2018 Sep 5;19(1):126. doi: 10.1186/s13059-018-1489-y. Genome Biol. 2018. PMID: 30180872 Free PMC article.
3D genome architecture from populations to single cells.
Furlan-Magaril M, Várnai C, Nagano T, Fraser P. Furlan-Magaril M, et al. Among authors: varnai c. Curr Opin Genet Dev. 2015 Apr;31:36-41. doi: 10.1016/j.gde.2015.04.004. Epub 2015 May 16. Curr Opin Genet Dev. 2015. PMID: 25966907 Review.
CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data.
Cairns J, Freire-Pritchett P, Wingett SW, Várnai C, Dimond A, Plagnol V, Zerbino D, Schoenfelder S, Javierre BM, Osborne C, Fraser P, Spivakov M. Cairns J, et al. Among authors: varnai c. Genome Biol. 2016 Jun 15;17(1):127. doi: 10.1186/s13059-016-0992-2. Genome Biol. 2016. PMID: 27306882 Free PMC article.
Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters.
Javierre BM, Burren OS, Wilder SP, Kreuzhuber R, Hill SM, Sewitz S, Cairns J, Wingett SW, Várnai C, Thiecke MJ, Burden F, Farrow S, Cutler AJ, Rehnström K, Downes K, Grassi L, Kostadima M, Freire-Pritchett P, Wang F; BLUEPRINT Consortium; Stunnenberg HG, Todd JA, Zerbino DR, Stegle O, Ouwehand WH, Frontini M, Wallace C, Spivakov M, Fraser P. Javierre BM, et al. Among authors: varnai c. Cell. 2016 Nov 17;167(5):1369-1384.e19. doi: 10.1016/j.cell.2016.09.037. Cell. 2016. PMID: 27863249 Free PMC article.
Short- and long-range cis interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis.
Groves IJ, Drane ELA, Michalski M, Monahan JM, Scarpini CG, Smith SP, Bussotti G, Várnai C, Schoenfelder S, Fraser P, Enright AJ, Coleman N. Groves IJ, et al. Among authors: varnai c. PLoS Pathog. 2021 Aug 25;17(8):e1009875. doi: 10.1371/journal.ppat.1009875. eCollection 2021 Aug. PLoS Pathog. 2021. PMID: 34432858 Free PMC article.
34 results