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Reactome enhanced pathway visualization.
Sidiropoulos K, Viteri G, Sevilla C, Jupe S, Webber M, Orlic-Milacic M, Jassal B, May B, Shamovsky V, Duenas C, Rothfels K, Matthews L, Song H, Stein L, Haw R, D'Eustachio P, Ping P, Hermjakob H, Fabregat A. Sidiropoulos K, et al. Among authors: hermjakob h. Bioinformatics. 2017 Nov 1;33(21):3461-3467. doi: 10.1093/bioinformatics/btx441. Bioinformatics. 2017. PMID: 29077811 Free PMC article.
Swissknife - 'lazy parsing' of SWISS-PROT entries.
Hermjakob H, Fleischmann W, Apweiler R. Hermjakob H, et al. Bioinformatics. 1999 Sep;15(9):771-2. doi: 10.1093/bioinformatics/15.9.771. Bioinformatics. 1999. PMID: 10498781
InterPro--an integrated documentation resource for protein families, domains and functional sites.
Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM; InterPro Consortium. Apweiler R, et al. Among authors: hermjakob h. Bioinformatics. 2000 Dec;16(12):1145-50. doi: 10.1093/bioinformatics/16.12.1145. Bioinformatics. 2000. PMID: 11159333
Dasty and UniProt DAS: a perfect pair for protein feature visualization.
Jones P, Vinod N, Down T, Hackmann A, Kahari A, Kretschmann E, Quinn A, Wieser D, Hermjakob H, Apweiler R. Jones P, et al. Among authors: hermjakob h. Bioinformatics. 2005 Jul 15;21(14):3198-9. doi: 10.1093/bioinformatics/bti506. Epub 2005 May 19. Bioinformatics. 2005. PMID: 15905273
Dasty2, an Ajax protein DAS client.
Jimenez RC, Quinn AF, Garcia A, Labarga A, O'Neill K, Martinez F, Salazar GA, Hermjakob H. Jimenez RC, et al. Among authors: hermjakob h. Bioinformatics. 2008 Sep 15;24(18):2119-21. doi: 10.1093/bioinformatics/btn387. Epub 2008 Aug 11. Bioinformatics. 2008. PMID: 18694895
The Protein Feature Ontology: a tool for the unification of protein feature annotations.
Reeves GA, Eilbeck K, Magrane M, O'Donovan C, Montecchi-Palazzi L, Harris MA, Orchard S, Jimenez RC, Prlic A, Hubbard TJ, Hermjakob H, Thornton JM. Reeves GA, et al. Among authors: hermjakob h. Bioinformatics. 2008 Dec 1;24(23):2767-72. doi: 10.1093/bioinformatics/btn528. Epub 2008 Oct 20. Bioinformatics. 2008. PMID: 18936051 Free PMC article.
Reactome knowledgebase of human biological pathways and processes.
Matthews L, Gopinath G, Gillespie M, Caudy M, Croft D, de Bono B, Garapati P, Hemish J, Hermjakob H, Jassal B, Kanapin A, Lewis S, Mahajan S, May B, Schmidt E, Vastrik I, Wu G, Birney E, Stein L, D'Eustachio P. Matthews L, et al. Among authors: hermjakob h. Nucleic Acids Res. 2009 Jan;37(Database issue):D619-22. doi: 10.1093/nar/gkn863. Epub 2008 Nov 3. Nucleic Acids Res. 2009. PMID: 18981052 Free PMC article.
286 results