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An objective comparison of cell-tracking algorithms.
Ulman V, Maška M, Magnusson KEG, Ronneberger O, Haubold C, Harder N, Matula P, Matula P, Svoboda D, Radojevic M, Smal I, Rohr K, Jaldén J, Blau HM, Dzyubachyk O, Lelieveldt B, Xiao P, Li Y, Cho SY, Dufour AC, Olivo-Marin JC, Reyes-Aldasoro CC, Solis-Lemus JA, Bensch R, Brox T, Stegmaier J, Mikut R, Wolf S, Hamprecht FA, Esteves T, Quelhas P, Demirel Ö, Malmström L, Jug F, Tomancak P, Meijering E, Muñoz-Barrutia A, Kozubek M, Ortiz-de-Solorzano C. Ulman V, et al. Among authors: maska m. Nat Methods. 2017 Dec;14(12):1141-1152. doi: 10.1038/nmeth.4473. Epub 2017 Oct 30. Nat Methods. 2017. PMID: 29083403 Free PMC article.
Objective comparison of particle tracking methods.
Chenouard N, Smal I, de Chaumont F, Maška M, Sbalzarini IF, Gong Y, Cardinale J, Carthel C, Coraluppi S, Winter M, Cohen AR, Godinez WJ, Rohr K, Kalaidzidis Y, Liang L, Duncan J, Shen H, Xu Y, Magnusson KE, Jaldén J, Blau HM, Paul-Gilloteaux P, Roudot P, Kervrann C, Waharte F, Tinevez JY, Shorte SL, Willemse J, Celler K, van Wezel GP, Dan HW, Tsai YS, Ortiz de Solórzano C, Olivo-Marin JC, Meijering E. Chenouard N, et al. Among authors: maska m. Nat Methods. 2014 Mar;11(3):281-9. doi: 10.1038/nmeth.2808. Epub 2014 Jan 19. Nat Methods. 2014. PMID: 24441936 Free PMC article.
A benchmark for comparison of cell tracking algorithms.
Maška M, Ulman V, Svoboda D, Matula P, Matula P, Ederra C, Urbiola A, España T, Venkatesan S, Balak DM, Karas P, Bolcková T, Streitová M, Carthel C, Coraluppi S, Harder N, Rohr K, Magnusson KE, Jaldén J, Blau HM, Dzyubachyk O, Křížek P, Hagen GM, Pastor-Escuredo D, Jimenez-Carretero D, Ledesma-Carbayo MJ, Muñoz-Barrutia A, Meijering E, Kozubek M, Ortiz-de-Solorzano C. Maška M, et al. Bioinformatics. 2014 Jun 1;30(11):1609-17. doi: 10.1093/bioinformatics/btu080. Epub 2014 Feb 12. Bioinformatics. 2014. PMID: 24526711 Free PMC article.
Characterization of three-dimensional cancer cell migration in mixed collagen-Matrigel scaffolds using microfluidics and image analysis.
Anguiano M, Castilla C, Maška M, Ederra C, Peláez R, Morales X, Muñoz-Arrieta G, Mujika M, Kozubek M, Muñoz-Barrutia A, Rouzaut A, Arana S, Garcia-Aznar JM, Ortiz-de-Solorzano C. Anguiano M, et al. Among authors: maska m. PLoS One. 2017 Feb 6;12(2):e0171417. doi: 10.1371/journal.pone.0171417. eCollection 2017. PLoS One. 2017. PMID: 28166248 Free PMC article.
3-D Quantification of Filopodia in Motile Cancer Cells.
Castilla C, Maska M, Sorokin DV, Meijering E, Ortiz-de-Solorzano C. Castilla C, et al. Among authors: maska m. IEEE Trans Med Imaging. 2019 Mar;38(3):862-872. doi: 10.1109/TMI.2018.2873842. Epub 2018 Oct 5. IEEE Trans Med Imaging. 2019. PMID: 30296215
TEM ExosomeAnalyzer: a computer-assisted software tool for quantitative evaluation of extracellular vesicles in transmission electron microscopy images.
Kotrbová A, Štěpka K, Maška M, Pálenik JJ, Ilkovics L, Klemová D, Kravec M, Hubatka F, Dave Z, Hampl A, Bryja V, Matula P, Pospíchalová V. Kotrbová A, et al. Among authors: maska m. J Extracell Vesicles. 2019 Jan 21;8(1):1560808. doi: 10.1080/20013078.2018.1560808. eCollection 2019. J Extracell Vesicles. 2019. PMID: 30719239 Free PMC article.
30 results