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An objective comparison of cell-tracking algorithms.
Ulman V, Maška M, Magnusson KEG, Ronneberger O, Haubold C, Harder N, Matula P, Matula P, Svoboda D, Radojevic M, Smal I, Rohr K, Jaldén J, Blau HM, Dzyubachyk O, Lelieveldt B, Xiao P, Li Y, Cho SY, Dufour AC, Olivo-Marin JC, Reyes-Aldasoro CC, Solis-Lemus JA, Bensch R, Brox T, Stegmaier J, Mikut R, Wolf S, Hamprecht FA, Esteves T, Quelhas P, Demirel Ö, Malmström L, Jug F, Tomancak P, Meijering E, Muñoz-Barrutia A, Kozubek M, Ortiz-de-Solorzano C. Ulman V, et al. Among authors: mikut r. Nat Methods. 2017 Dec;14(12):1141-1152. doi: 10.1038/nmeth.4473. Epub 2017 Oct 30. Nat Methods. 2017. PMID: 29083403 Free PMC article.
Automated processing of zebrafish imaging data: a survey.
Mikut R, Dickmeis T, Driever W, Geurts P, Hamprecht FA, Kausler BX, Ledesma-Carbayo MJ, Marée R, Mikula K, Pantazis P, Ronneberger O, Santos A, Stotzka R, Strähle U, Peyriéras N. Mikut R, et al. Zebrafish. 2013 Sep;10(3):401-21. doi: 10.1089/zeb.2013.0886. Epub 2013 Jun 12. Zebrafish. 2013. PMID: 23758125 Free PMC article. Review.
An ensemble-averaged, cell density-based digital model of zebrafish embryo development derived from light-sheet microscopy data with single-cell resolution.
Kobitski AY, Otte JC, Takamiya M, Schäfer B, Mertes J, Stegmaier J, Rastegar S, Rindone F, Hartmann V, Stotzka R, García A, van Wezel J, Mikut R, Strähle U, Nienhaus GU. Kobitski AY, et al. Among authors: mikut r. Sci Rep. 2015 Feb 25;5:8601. doi: 10.1038/srep08601. Sci Rep. 2015. PMID: 25712513 Free PMC article.
XPIWIT--an XML pipeline wrapper for the Insight Toolkit.
Bartschat A, Hübner E, Reischl M, Mikut R, Stegmaier J. Bartschat A, et al. Among authors: mikut r. Bioinformatics. 2016 Jan 15;32(2):315-7. doi: 10.1093/bioinformatics/btv559. Epub 2015 Sep 28. Bioinformatics. 2016. PMID: 26415725
96 results