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An objective comparison of cell-tracking algorithms.
Ulman V, Maška M, Magnusson KEG, Ronneberger O, Haubold C, Harder N, Matula P, Matula P, Svoboda D, Radojevic M, Smal I, Rohr K, Jaldén J, Blau HM, Dzyubachyk O, Lelieveldt B, Xiao P, Li Y, Cho SY, Dufour AC, Olivo-Marin JC, Reyes-Aldasoro CC, Solis-Lemus JA, Bensch R, Brox T, Stegmaier J, Mikut R, Wolf S, Hamprecht FA, Esteves T, Quelhas P, Demirel Ö, Malmström L, Jug F, Tomancak P, Meijering E, Muñoz-Barrutia A, Kozubek M, Ortiz-de-Solorzano C. Ulman V, et al. Nat Methods. 2017 Dec;14(12):1141-1152. doi: 10.1038/nmeth.4473. Epub 2017 Oct 30. Nat Methods. 2017. PMID: 29083403 Free PMC article.
Quantitative in vivo microscopy: the return from the 'omics'.
Fernández-González R, Muñoz-Barrutia A, Barcellos-Hoff MH, Ortiz-de-Solorzano C. Fernández-González R, et al. Curr Opin Biotechnol. 2006 Oct;17(5):501-10. doi: 10.1016/j.copbio.2006.07.005. Epub 2006 Aug 8. Curr Opin Biotechnol. 2006. PMID: 16899361 Review.
Halton sampling for autofocus.
Pengo T, Muñoz-Barrutia A, Ortiz-De-Solórzano C. Pengo T, et al. J Microsc. 2009 Jul;235(1):50-8. doi: 10.1111/j.1365-2818.2009.03180.x. J Microsc. 2009. PMID: 19566626
Spatially variant convolution with scaled B-splines.
Muñoz-Barrutia A, Artaechevarria X, Ortiz-de-Solorzano C. Muñoz-Barrutia A, et al. IEEE Trans Image Process. 2010 Jan;19(1):11-24. doi: 10.1109/TIP.2009.2031235. IEEE Trans Image Process. 2010. PMID: 19717360
Non-rigid consistent registration of 2D image sequences.
Arganda-Carreras I, Sorzano CO, Thévenaz P, Muñoz-Barrutia A, Kybic J, Marabini R, Carazo JM, Ortiz-de Solorzano C. Arganda-Carreras I, et al. Phys Med Biol. 2010 Oct 21;55(20):6215-42. doi: 10.1088/0031-9155/55/20/012. Epub 2010 Sep 30. Phys Med Biol. 2010. PMID: 20885021
70 results