Olivo-Marin JC - Search Results

1

An objective comparison of cell-tracking algorithms.

Ulman V, Maška M, Magnusson KEG, Ronneberger O, Haubold C, Harder N, Matula P, Matula P, Svoboda D, Radojevic M, Smal I, Rohr K, Jaldén J, Blau HM, Dzyubachyk O, Lelieveldt B, Xiao P, Li Y, Cho SY, Dufour AC, Olivo-Marin JC, Reyes-Aldasoro CC, Solis-Lemus JA, Bensch R, Brox T, Stegmaier J, Mikut R, Wolf S, Hamprecht FA, Esteves T, Quelhas P, Demirel Ö, Malmström L, Jug F, Tomancak P, Meijering E, Muñoz-Barrutia A, Kozubek M, Ortiz-de-Solorzano C. Ulman V, et al. Nat Methods. 2017 Dec;14(12):1141-1152. doi: 10.1038/nmeth.4473. Epub 2017 Oct 30. Nat Methods. 2017. PMID: 29083403 Free PMC article.

2

Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces.

Dufour A, Shinin V, Tajbakhsh S, Guillén-Aghion N, Olivo-Marin JC, Zimmer C. Dufour A, et al. IEEE Trans Image Process. 2005 Sep;14(9):1396-410. doi: 10.1109/tip.2005.852790. IEEE Trans Image Process. 2005. PMID: 16190474

3

Tracking algorithms chase down pathogens.

Chenouard N, Dufour A, Olivo-Marin JC. Chenouard N, et al. Biotechnol J. 2009 Jun;4(6):838-45. doi: 10.1002/biot.200900030. Biotechnol J. 2009. PMID: 19548236 Review.

4

Escape of HIV-1-infected dendritic cells from TRAIL-mediated NK cell cytotoxicity during NK-DC cross-talk--a pivotal role of HMGB1.

Melki MT, Saïdi H, Dufour A, Olivo-Marin JC, Gougeon ML. Melki MT, et al. PLoS Pathog. 2010 Apr 15;6(4):e1000862. doi: 10.1371/journal.ppat.1000862. PLoS Pathog. 2010. PMID: 20419158 Free PMC article.

5

3-D active meshes: fast discrete deformable models for cell tracking in 3-D time-lapse microscopy.

Dufour A, Thibeaux R, Labruyère E, Guillén N, Olivo-Marin JC. Dufour A, et al. IEEE Trans Image Process. 2011 Jul;20(7):1925-37. doi: 10.1109/TIP.2010.2099125. Epub 2010 Dec 30. IEEE Trans Image Process. 2011. PMID: 21193379

6

Spherical Harmonics based extraction and annotation of cell shape in 3D time-lapse microscopy sequences.

Ducroz C, Olivo-Marin JC, Dufour A. Ducroz C, et al. Annu Int Conf IEEE Eng Med Biol Soc. 2011;2011:6619-22. doi: 10.1109/IEMBS.2011.6091632. Annu Int Conf IEEE Eng Med Biol Soc. 2011. PMID: 22255856

7

Computerized video analysis of social interactions in mice.

de Chaumont F, Coura RD, Serreau P, Cressant A, Chabout J, Granon S, Olivo-Marin JC. de Chaumont F, et al. Nat Methods. 2012 Mar 4;9(4):410-7. doi: 10.1038/nmeth.1924. Nat Methods. 2012. PMID: 22388289

8

Icy: an open bioimage informatics platform for extended reproducible research.

de Chaumont F, Dallongeville S, Chenouard N, Hervé N, Pop S, Provoost T, Meas-Yedid V, Pankajakshan P, Lecomte T, Le Montagner Y, Lagache T, Dufour A, Olivo-Marin JC. de Chaumont F, et al. Nat Methods. 2012 Jun 28;9(7):690-6. doi: 10.1038/nmeth.2075. Nat Methods. 2012. PMID: 22743774

9

Quantitative analysis of polarity in 3D reveals local cell coordination in the embryonic mouse heart.

Le Garrec JF, Ragni CV, Pop S, Dufour A, Olivo-Marin JC, Buckingham ME, Meilhac SM. Le Garrec JF, et al. Development. 2013 Jan 15;140(2):395-404. doi: 10.1242/dev.087940. Development. 2013. PMID: 23250213

10

Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart.

Pop S, Dufour AC, Le Garrec JF, Ragni CV, Cimper C, Meilhac SM, Olivo-Marin JC. Pop S, et al. Bioinformatics. 2013 Mar 15;29(6):772-9. doi: 10.1093/bioinformatics/btt027. Epub 2013 Jan 21. Bioinformatics. 2013. PMID: 23337749

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