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Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data.
Rubelt F, Busse CE, Bukhari SAC, Bürckert JP, Mariotti-Ferrandiz E, Cowell LG, Watson CT, Marthandan N, Faison WJ, Hershberg U, Laserson U, Corrie BD, Davis MM, Peters B, Lefranc MP, Scott JK, Breden F; AIRR Community; Luning Prak ET, Kleinstein SH. Rubelt F, et al. Among authors: hershberg u. Nat Immunol. 2017 Nov 16;18(12):1274-1278. doi: 10.1038/ni.3873. Nat Immunol. 2017. PMID: 29144493 Free PMC article.
VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements.
Toby IT, Levin MK, Salinas EA, Christley S, Bhattacharya S, Breden F, Buntzman A, Corrie B, Fonner J, Gupta NT, Hershberg U, Marthandan N, Rosenfeld A, Rounds W, Rubelt F, Scarborough W, Scott JK, Uduman M, Vander Heiden JA, Scheuermann RH, Monson N, Kleinstein SH, Cowell LG. Toby IT, et al. Among authors: hershberg u. BMC Bioinformatics. 2016 Oct 6;17(Suppl 13):333. doi: 10.1186/s12859-016-1214-3. BMC Bioinformatics. 2016. PMID: 27766961 Free PMC article.
AIRR Community Standardized Representations for Annotated Immune Repertoires.
Vander Heiden JA, Marquez S, Marthandan N, Bukhari SAC, Busse CE, Corrie B, Hershberg U, Kleinstein SH, Matsen Iv FA, Ralph DK, Rosenfeld AM, Schramm CA; AIRR Community; Christley S, Laserson U. Vander Heiden JA, et al. Among authors: hershberg u. Front Immunol. 2018 Sep 28;9:2206. doi: 10.3389/fimmu.2018.02206. eCollection 2018. Front Immunol. 2018. PMID: 30323809 Free PMC article.
Computational Evaluation of B-Cell Clone Sizes in Bulk Populations.
Rosenfeld AM, Meng W, Chen DY, Zhang B, Granot T, Farber DL, Hershberg U, Luning Prak ET. Rosenfeld AM, et al. Among authors: hershberg u. Front Immunol. 2018 Jun 29;9:1472. doi: 10.3389/fimmu.2018.01472. eCollection 2018. Front Immunol. 2018. PMID: 30008715 Free PMC article.
Biomedical model fitting and error analysis.
Costa KD, Kleinstein SH, Hershberg U. Costa KD, et al. Among authors: hershberg u. Sci Signal. 2011 Sep 20;4(192):tr9. doi: 10.1126/scisignal.2001983. Sci Signal. 2011. PMID: 21954296 Free PMC article.
An atlas of B-cell clonal distribution in the human body.
Meng W, Zhang B, Schwartz GW, Rosenfeld AM, Ren D, Thome JJC, Carpenter DJ, Matsuoka N, Lerner H, Friedman AL, Granot T, Farber DL, Shlomchik MJ, Hershberg U, Luning Prak ET. Meng W, et al. Among authors: hershberg u. Nat Biotechnol. 2017 Sep;35(9):879-884. doi: 10.1038/nbt.3942. Epub 2017 Aug 21. Nat Biotechnol. 2017. PMID: 28829438 Free PMC article.
47 results