Berezikov E - Search Results

1

Efficient transgenesis and annotated genome sequence of the regenerative flatworm model Macrostomum lignano.

Wudarski J, Simanov D, Ustyantsev K, de Mulder K, Grelling M, Grudniewska M, Beltman F, Glazenburg L, Demircan T, Wunderer J, Qi W, Vizoso DB, Weissert PM, Olivieri D, Mouton S, Guryev V, Aboobaker A, Schärer L, Ladurner P, Berezikov E. Wudarski J, et al. Among authors: berezikov e. Nat Commun. 2017 Dec 14;8(1):2120. doi: 10.1038/s41467-017-02214-8. Nat Commun. 2017. PMID: 29242515 Free PMC article.

2

CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting.

Berezikov E, Guryev V, Plasterk RH, Cuppen E. Berezikov E, et al. Genome Res. 2004 Jan;14(1):170-8. doi: 10.1101/gr.1642804. Epub 2003 Dec 12. Genome Res. 2004. PMID: 14672977 Free PMC article.

3

Single nucleotide polymorphisms associated with rat expressed sequences.

Guryev V, Berezikov E, Malik R, Plasterk RH, Cuppen E. Guryev V, et al. Among authors: berezikov e. Genome Res. 2004 Jul;14(7):1438-43. doi: 10.1101/gr.2154304. Genome Res. 2004. PMID: 15231757 Free PMC article.

4

CASCAD: a database of annotated candidate single nucleotide polymorphisms associated with expressed sequences.

Guryev V, Berezikov E, Cuppen E. Guryev V, et al. Among authors: berezikov e. BMC Genomics. 2005 Jan 27;6:10. doi: 10.1186/1471-2164-6-10. BMC Genomics. 2005. PMID: 15676075 Free PMC article.

5

CONREAL web server: identification and visualization of conserved transcription factor binding sites.

Berezikov E, Guryev V, Cuppen E. Berezikov E, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W447-50. doi: 10.1093/nar/gki378. Nucleic Acids Res. 2005. PMID: 15980509 Free PMC article.

6

Genetic variation in the zebrafish.

Guryev V, Koudijs MJ, Berezikov E, Johnson SL, Plasterk RH, van Eeden FJ, Cuppen E. Guryev V, et al. Among authors: berezikov e. Genome Res. 2006 Apr;16(4):491-7. doi: 10.1101/gr.4791006. Epub 2006 Mar 13. Genome Res. 2006. PMID: 16533913 Free PMC article.

7

Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis.

Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E. Berezikov E, et al. Genome Res. 2006 Oct;16(10):1289-98. doi: 10.1101/gr.5159906. Epub 2006 Sep 5. Genome Res. 2006. PMID: 16954537 Free PMC article.

8

Exploring conservation of transcription factor binding sites with CONREAL.

Berezikov E, Guryev V, Cuppen E. Berezikov E, et al. Methods Mol Biol. 2007;395:437-48. doi: 10.1007/978-1-59745-514-5_27. Methods Mol Biol. 2007. PMID: 17993690

9

Tracing the evolution of tissue identity with microRNAs.

De Mulder K, Berezikov E. De Mulder K, et al. Among authors: berezikov e. Genome Biol. 2010;11(3):111. doi: 10.1186/gb-2010-11-3-111. Epub 2010 Mar 30. Genome Biol. 2010. PMID: 20353543 Free PMC article. Review.

10

Hen1 is required for oocyte development and piRNA stability in zebrafish.

Kamminga LM, Luteijn MJ, den Broeder MJ, Redl S, Kaaij LJ, Roovers EF, Ladurner P, Berezikov E, Ketting RF. Kamminga LM, et al. Among authors: berezikov e. EMBO J. 2010 Nov 3;29(21):3688-700. doi: 10.1038/emboj.2010.233. Epub 2010 Sep 21. EMBO J. 2010. PMID: 20859253 Free PMC article.

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