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A Bayesian Active Learning Experimental Design for Inferring Signaling Networks.
J Comput Biol. 2018 Jul;25(7):709-725. doi: 10.1089/cmb.2017.0247. Epub 2018 Jun 21.
J Comput Biol. 2018.
PMID: 29927613
From Correlation to Causality: Statistical Approaches to Learning Regulatory Relationships in Large-Scale Biomolecular Investigations.
Ness RO, Sachs K, Vitek O.
Ness RO, et al.
J Proteome Res. 2016 Mar 4;15(3):683-90. doi: 10.1021/acs.jproteome.5b00911. Epub 2016 Jan 12.
J Proteome Res. 2016.
PMID: 26731284
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Do-calculus enables estimation of causal effects in partially observed biomolecular pathways.
Mohammad-Taheri S, Zucker J, Hoyt CT, Sachs K, Tewari V, Ness R, Vitek O.
Mohammad-Taheri S, et al.
Bioinformatics. 2022 Jun 24;38(Suppl 1):i350-i358. doi: 10.1093/bioinformatics/btac251.
Bioinformatics. 2022.
PMID: 35758817
Free PMC article.
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Leveraging Structured Biological Knowledge for Counterfactual Inference: A Case Study of Viral Pathogenesis.
Zucker J, Paneri K, Mohammad-Taheri S, Bhargava S, Kolambkar P, Bakker C, Teuton J, Hoyt CT, Oxford K, Ness R, Vitek O.
Zucker J, et al.
IEEE Trans Big Data. 2021 Jan 18;7(1):25-37. doi: 10.1109/TBDATA.2021.3050680. eCollection 2021 Mar 1.
IEEE Trans Big Data. 2021.
PMID: 37981991
Free PMC article.
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Hypothyroidism - A Causal Approach to Testing Assumptions against Empirical Results.
Glavin R, Ness RO, Nguyen A.
Glavin R, et al. Among authors: ness ro.
AMIA Jt Summits Transl Sci Proc. 2021 May 17;2021:257-266. eCollection 2021.
AMIA Jt Summits Transl Sci Proc. 2021.
PMID: 34457140
Free PMC article.
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