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Metabolite and reaction inference based on enzyme specificities.
de Groot MJ, van Berlo RJ, van Winden WA, Verheijen PJ, Reinders MJ, de Ridder D. de Groot MJ, et al. Among authors: de ridder d. Bioinformatics. 2009 Nov 15;25(22):2975-82. doi: 10.1093/bioinformatics/btp507. Epub 2009 Aug 20. Bioinformatics. 2009. PMID: 19696044 Free PMC article.
ACE: accurate correction of errors using K-mer tries.
Sheikhizadeh S, de Ridder D. Sheikhizadeh S, et al. Among authors: de ridder d. Bioinformatics. 2015 Oct 1;31(19):3216-8. doi: 10.1093/bioinformatics/btv332. Epub 2015 May 28. Bioinformatics. 2015. PMID: 26026137
Selected proceedings of Machine Learning in Systems Biology: MLSB 2016.
van Dijk AD, Lähdesmäki H, de Ridder D, Rousu J. van Dijk AD, et al. Among authors: de ridder d. BMC Bioinformatics. 2016 Dec 13;17(Suppl 16):437. doi: 10.1186/s12859-016-1305-1. BMC Bioinformatics. 2016. PMID: 28105910 Free PMC article. No abstract available.
Sequence-based analysis of protein degradation rates.
Correa Marrero M, van Dijk ADJ, de Ridder D. Correa Marrero M, et al. Among authors: de ridder d. Proteins. 2017 Sep;85(9):1593-1601. doi: 10.1002/prot.25323. Epub 2017 Jun 10. Proteins. 2017. PMID: 28547871
931 results