Stadhouders R - Search Results

1

Transcription factors and 3D genome conformation in cell-fate decisions.

Stadhouders R, Filion GJ, Graf T. Stadhouders R, et al. Nature. 2019 May;569(7756):345-354. doi: 10.1038/s41586-019-1182-7. Epub 2019 May 15. Nature. 2019. PMID: 31092938 Review.

2

Transcription regulation by distal enhancers: who's in the loop?

Stadhouders R, van den Heuvel A, Kolovos P, Jorna R, Leslie K, Grosveld F, Soler E. Stadhouders R, et al. Transcription. 2012 Jul-Aug;3(4):181-6. doi: 10.4161/trns.20720. Epub 2012 Jul 1. Transcription. 2012. PMID: 22771987 Free PMC article. Review.

3

Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions.

Stadhouders R, Kolovos P, Brouwer R, Zuin J, van den Heuvel A, Kockx C, Palstra RJ, Wendt KS, Grosveld F, van Ijcken W, Soler E. Stadhouders R, et al. Nat Protoc. 2013 Mar;8(3):509-24. doi: 10.1038/nprot.2013.018. Epub 2013 Feb 14. Nat Protoc. 2013. PMID: 23411633

4

Control of developmentally primed erythroid genes by combinatorial co-repressor actions.

Stadhouders R, Cico A, Stephen T, Thongjuea S, Kolovos P, Baymaz HI, Yu X, Demmers J, Bezstarosti K, Maas A, Barroca V, Kockx C, Ozgur Z, van Ijcken W, Arcangeli ML, Andrieu-Soler C, Lenhard B, Grosveld F, Soler E. Stadhouders R, et al. Nat Commun. 2015 Nov 23;6:8893. doi: 10.1038/ncomms9893. Nat Commun. 2015. PMID: 26593974 Free PMC article.

5

C/EBPα creates elite cells for iPSC reprogramming by upregulating Klf4 and increasing the levels of Lsd1 and Brd4.

Di Stefano B, Collombet S, Jakobsen JS, Wierer M, Sardina JL, Lackner A, Stadhouders R, Segura-Morales C, Francesconi M, Limone F, Mann M, Porse B, Thieffry D, Graf T. Di Stefano B, et al. Among authors: stadhouders r. Nat Cell Biol. 2016 Apr;18(4):371-81. doi: 10.1038/ncb3326. Epub 2016 Mar 14. Nat Cell Biol. 2016. PMID: 26974661

6

Unbiased Interrogation of 3D Genome Topology Using Chromosome Conformation Capture Coupled to High-Throughput Sequencing (4C-Seq).

Brouwer RW, van den Hout MC, van IJcken WF, Soler E, Stadhouders R. Brouwer RW, et al. Among authors: stadhouders r. Methods Mol Biol. 2017;1507:199-220. doi: 10.1007/978-1-4939-6518-2_15. Methods Mol Biol. 2017. PMID: 27832542

7

Systemic Human ILC Precursors Provide a Substrate for Tissue ILC Differentiation.

Lim AI, Li Y, Lopez-Lastra S, Stadhouders R, Paul F, Casrouge A, Serafini N, Puel A, Bustamante J, Surace L, Masse-Ranson G, David E, Strick-Marchand H, Le Bourhis L, Cocchi R, Topazio D, Graziano P, Muscarella LA, Rogge L, Norel X, Sallenave JM, Allez M, Graf T, Hendriks RW, Casanova JL, Amit I, Yssel H, Di Santo JP. Lim AI, et al. Among authors: stadhouders r. Cell. 2017 Mar 9;168(6):1086-1100.e10. doi: 10.1016/j.cell.2017.02.021. Cell. 2017. PMID: 28283063 Free article.

8

Parallel sequencing lives, or what makes large sequencing projects successful.

Quilez J, Vidal E, Dily FL, Serra F, Cuartero Y, Stadhouders R, Graf T, Marti-Renom MA, Beato M, Filion G. Quilez J, et al. Among authors: stadhouders r. Gigascience. 2017 Nov 1;6(11):1-6. doi: 10.1093/gigascience/gix100. Gigascience. 2017. PMID: 29048533 Free PMC article.

9

Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming.

Stadhouders R, Vidal E, Serra F, Di Stefano B, Le Dily F, Quilez J, Gomez A, Collombet S, Berenguer C, Cuartero Y, Hecht J, Filion GJ, Beato M, Marti-Renom MA, Graf T. Stadhouders R, et al. Nat Genet. 2018 Feb;50(2):238-249. doi: 10.1038/s41588-017-0030-7. Epub 2018 Jan 15. Nat Genet. 2018. PMID: 29335546 Free PMC article.

10

OneD: increasing reproducibility of Hi-C samples with abnormal karyotypes.

Vidal E, le Dily F, Quilez J, Stadhouders R, Cuartero Y, Graf T, Marti-Renom MA, Beato M, Filion GJ. Vidal E, et al. Among authors: stadhouders r. Nucleic Acids Res. 2018 May 4;46(8):e49. doi: 10.1093/nar/gky064. Nucleic Acids Res. 2018. PMID: 29394371 Free PMC article.

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