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Structure-guided SCHEMA recombination generates diverse chimeric channelrhodopsins.
Bedbrook CN, Rice AJ, Yang KK, Ding X, Chen S, LeProust EM, Gradinaru V, Arnold FH. Bedbrook CN, et al. Among authors: yang kk. Proc Natl Acad Sci U S A. 2017 Mar 28;114(13):E2624-E2633. doi: 10.1073/pnas.1700269114. Epub 2017 Mar 10. Proc Natl Acad Sci U S A. 2017. PMID: 28283661 Free PMC article.
Learned protein embeddings for machine learning.
Yang KK, Wu Z, Bedbrook CN, Arnold FH. Yang KK, et al. Bioinformatics. 2018 Aug 1;34(15):2642-2648. doi: 10.1093/bioinformatics/bty178. Bioinformatics. 2018. PMID: 29584811 Free PMC article.
Learned protein embeddings for machine learning.
Yang KK, Wu Z, Bedbrook CN, Arnold FH. Yang KK, et al. Bioinformatics. 2018 Dec 1;34(23):4138. doi: 10.1093/bioinformatics/bty455. Bioinformatics. 2018. PMID: 29933431 Free PMC article. No abstract available.
Signal Peptides Generated by Attention-Based Neural Networks.
Wu Z, Yang KK, Liszka MJ, Lee A, Batzilla A, Wernick D, Weiner DP, Arnold FH. Wu Z, et al. Among authors: yang kk. ACS Synth Biol. 2020 Aug 21;9(8):2154-2161. doi: 10.1021/acssynbio.0c00219. Epub 2020 Jul 27. ACS Synth Biol. 2020. PMID: 32649182 Free article.
Protein sequence design with deep generative models.
Wu Z, Johnston KE, Arnold FH, Yang KK. Wu Z, et al. Among authors: yang kk. Curr Opin Chem Biol. 2021 Dec;65:18-27. doi: 10.1016/j.cbpa.2021.04.004. Epub 2021 May 26. Curr Opin Chem Biol. 2021. PMID: 34051682 Free article. Review.
Adaptive machine learning for protein engineering.
Hie BL, Yang KK. Hie BL, et al. Among authors: yang kk. Curr Opin Struct Biol. 2022 Feb;72:145-152. doi: 10.1016/j.sbi.2021.11.002. Epub 2021 Dec 9. Curr Opin Struct Biol. 2022. PMID: 34896756 Free article. Review.
71 results