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Page 1
Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization.
Kong R, Duan H, Sheng Z, Xu K, Acharya P, Chen X, Cheng C, Dingens AS, Gorman J, Sastry M, Shen CH, Zhang B, Zhou T, Chuang GY, Chao CW, Gu Y, Jafari AJ, Louder MK, O'Dell S, Rowshan AP, Viox EG, Wang Y, Choi CW, Corcoran MM, Corrigan AR, Dandey VP, Eng ET, Geng H, Foulds KE, Guo Y, Kwon YD, Lin B, Liu K, Mason RD, Nason MC, Ohr TY, Ou L, Rawi R, Sarfo EK, Schön A, Todd JP, Wang S, Wei H, Wu W; NISC Comparative Sequencing Program; Mullikin JC, Bailer RT, Doria-Rose NA, Karlsson Hedestam GB, Scorpio DG, Overbaugh J, Bloom JD, Carragher B, Potter CS, Shapiro L, Kwong PD, Mascola JR. Kong R, et al. Among authors: eng et. Cell. 2019 Jul 25;178(3):567-584.e19. doi: 10.1016/j.cell.2019.06.030. Cell. 2019. PMID: 31348886 Free PMC article.
Big data in cryoEM: automated collection, processing and accessibility of EM data.
Baldwin PR, Tan YZ, Eng ET, Rice WJ, Noble AJ, Negro CJ, Cianfrocco MA, Potter CS, Carragher B. Baldwin PR, et al. Among authors: eng et. Curr Opin Microbiol. 2018 Jun;43:1-8. doi: 10.1016/j.mib.2017.10.005. Epub 2017 Oct 31. Curr Opin Microbiol. 2018. PMID: 29100109 Free PMC article. Review.
Spotiton: New features and applications.
Dandey VP, Wei H, Zhang Z, Tan YZ, Acharya P, Eng ET, Rice WJ, Kahn PA, Potter CS, Carragher B. Dandey VP, et al. Among authors: eng et. J Struct Biol. 2018 May;202(2):161-169. doi: 10.1016/j.jsb.2018.01.002. J Struct Biol. 2018. PMID: 29366716 Free PMC article.
Routine single particle CryoEM sample and grid characterization by tomography.
Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B. Noble AJ, et al. Among authors: eng et. Elife. 2018 May 29;7:e34257. doi: 10.7554/eLife.34257. Elife. 2018. PMID: 29809143 Free PMC article.
Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1.
Xu K, Acharya P, Kong R, Cheng C, Chuang GY, Liu K, Louder MK, O'Dell S, Rawi R, Sastry M, Shen CH, Zhang B, Zhou T, Asokan M, Bailer RT, Chambers M, Chen X, Choi CW, Dandey VP, Doria-Rose NA, Druz A, Eng ET, Farney SK, Foulds KE, Geng H, Georgiev IS, Gorman J, Hill KR, Jafari AJ, Kwon YD, Lai YT, Lemmin T, McKee K, Ohr TY, Ou L, Peng D, Rowshan AP, Sheng Z, Todd JP, Tsybovsky Y, Viox EG, Wang Y, Wei H, Yang Y, Zhou AF, Chen R, Yang L, Scorpio DG, McDermott AB, Shapiro L, Carragher B, Potter CS, Mascola JR, Kwong PD. Xu K, et al. Among authors: eng et. Nat Med. 2018 Jun;24(6):857-867. doi: 10.1038/s41591-018-0042-6. Epub 2018 Jun 4. Nat Med. 2018. PMID: 29867235 Free PMC article.
Benchmarking cryo-EM Single Particle Analysis Workflow.
Kim LY, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AM, Jordan KD, Bobe D, Potter CS, Carragher B. Kim LY, et al. Among authors: eng et. Front Mol Biosci. 2018 Jun 4;5:50. doi: 10.3389/fmolb.2018.00050. eCollection 2018. Front Mol Biosci. 2018. PMID: 29951483 Free PMC article.
Routine determination of ice thickness for cryo-EM grids.
Rice WJ, Cheng A, Noble AJ, Eng ET, Kim LY, Carragher B, Potter CS. Rice WJ, et al. Among authors: eng et. J Struct Biol. 2018 Oct;204(1):38-44. doi: 10.1016/j.jsb.2018.06.007. Epub 2018 Jul 4. J Struct Biol. 2018. PMID: 29981485 Free PMC article.
Reducing cryoEM file storage using lossy image formats.
Eng ET, Kopylov M, Negro CJ, Dallaykan S, Rice WJ, Jordan KD, Kelley K, Carragher B, Potter CS. Eng ET, et al. J Struct Biol. 2019 Jul 1;207(1):49-55. doi: 10.1016/j.jsb.2019.04.013. Epub 2019 May 21. J Struct Biol. 2019. PMID: 31121317 Free PMC article.
Time-resolved cryo-EM using Spotiton.
Dandey VP, Budell WC, Wei H, Bobe D, Maruthi K, Kopylov M, Eng ET, Kahn PA, Hinshaw JE, Kundu N, Nimigean CM, Fan C, Sukomon N, Darst SA, Saecker RM, Chen J, Malone B, Potter CS, Carragher B. Dandey VP, et al. Among authors: eng et. Nat Methods. 2020 Sep;17(9):897-900. doi: 10.1038/s41592-020-0925-6. Epub 2020 Aug 10. Nat Methods. 2020. PMID: 32778833 Free PMC article.
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