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FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources.
Cell Syst. 2019 Nov 27;9(5):417-421. doi: 10.1016/j.cels.2019.09.011. Epub 2019 Oct 30.
Cell Syst. 2019.
PMID: 31677972
Free PMC article.
modEnrichr: a suite of gene set enrichment analysis tools for model organisms.
Kuleshov MV, Diaz JEL, Flamholz ZN, Keenan AB, Lachmann A, Wojciechowicz ML, Cagan RL, Ma'ayan A.
Kuleshov MV, et al. Among authors: flamholz zn.
Nucleic Acids Res. 2019 Jul 2;47(W1):W183-W190. doi: 10.1093/nar/gkz347.
Nucleic Acids Res. 2019.
PMID: 31069376
Free PMC article.
Item in Clipboard
Large language models improve annotation of prokaryotic viral proteins.
Flamholz ZN, Biller SJ, Kelly L.
Flamholz ZN, et al.
Nat Microbiol. 2024 Feb;9(2):537-549. doi: 10.1038/s41564-023-01584-8. Epub 2024 Jan 29.
Nat Microbiol. 2024.
PMID: 38287147
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H/ACA snRNP-dependent ribosome biogenesis regulates translation of polyglutamine proteins.
Breznak SM, Peng Y, Deng L, Kotb NM, Flamholz Z, Rapisarda IT, Martin ET, LaBarge KA, Fabris D, Gavis ER, Rangan P.
Breznak SM, et al. Among authors: flamholz z.
Sci Adv. 2023 Jun 23;9(25):eade5492. doi: 10.1126/sciadv.ade5492. Epub 2023 Jun 21.
Sci Adv. 2023.
PMID: 37343092
Free PMC article.
Item in Clipboard
Large language models improve annotation of viral proteins.
Flamholz ZN, Biller SJ, Kelly L.
Flamholz ZN, et al.
Res Sq [Preprint]. 2023 May 2:rs.3.rs-2852098. doi: 10.21203/rs.3.rs-2852098/v1.
Res Sq. 2023.
PMID: 37205395
Free PMC article.
Updated.
Preprint.
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Word embeddings trained on published case reports are lightweight, effective for clinical tasks, and free of protected health information.
Flamholz ZN, Crane-Droesch A, Ungar LH, Weissman GE.
Flamholz ZN, et al.
J Biomed Inform. 2022 Jan;125:103971. doi: 10.1016/j.jbi.2021.103971. Epub 2021 Dec 14.
J Biomed Inform. 2022.
PMID: 34920127
Free PMC article.
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