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Therapy-induced mutations drive the genomic landscape of relapsed acute lymphoblastic leukemia.
Li B, Brady SW, Ma X, Shen S, Zhang Y, Li Y, Szlachta K, Dong L, Liu Y, Yang F, Wang N, Flasch DA, Myers MA, Mulder HL, Ding L, Liu Y, Tian L, Hagiwara K, Xu K, Zhou X, Sioson E, Wang T, Yang L, Zhao J, Zhang H, Shao Y, Sun H, Sun L, Cai J, Sun HY, Lin TN, Du L, Li H, Rusch M, Edmonson MN, Easton J, Zhu X, Zhang J, Cheng C, Raphael BJ, Tang J, Downing JR, Alexandrov LB, Zhou BS, Pui CH, Yang JJ, Zhang J. Li B, et al. Among authors: szlachta k. Blood. 2020 Jan 2;135(1):41-55. doi: 10.1182/blood.2019002220. Blood. 2020. PMID: 31697823 Free PMC article.
Discovery of regulatory noncoding variants in individual cancer genomes by using cis-X.
Liu Y, Li C, Shen S, Chen X, Szlachta K, Edmonson MN, Shao Y, Ma X, Hyle J, Wright S, Ju B, Rusch MC, Liu Y, Li B, Macias M, Tian L, Easton J, Qian M, Yang JJ, Hu S, Look AT, Zhang J. Liu Y, et al. Among authors: szlachta k. Nat Genet. 2020 Aug;52(8):811-818. doi: 10.1038/s41588-020-0659-5. Epub 2020 Jul 6. Nat Genet. 2020. PMID: 32632335 Free PMC article.
SequencErr: measuring and suppressing sequencer errors in next-generation sequencing data.
Davis EM, Sun Y, Liu Y, Kolekar P, Shao Y, Szlachta K, Mulder HL, Ren D, Rice SV, Wang Z, Nakitandwe J, Gout AM, Shaner B, Hall S, Robison LL, Pounds S, Klco JM, Easton J, Ma X. Davis EM, et al. Among authors: szlachta k. Genome Biol. 2021 Jan 25;22(1):37. doi: 10.1186/s13059-020-02254-2. Genome Biol. 2021. PMID: 33487172 Free PMC article.
Convergent evolution and multi-wave clonal invasion in H3 K27-altered diffuse midline gliomas treated with a PDGFR inhibitor.
Arunachalam S, Szlachta K, Brady SW, Ma X, Ju B, Shaner B, Mulder HL, Easton J, Raphael BJ, Myers M, Tinkle C, Allen SJ, Orr BA, Wetmore CJ, Baker SJ, Zhang J. Arunachalam S, et al. Among authors: szlachta k. Acta Neuropathol Commun. 2022 May 31;10(1):80. doi: 10.1186/s40478-022-01381-0. Acta Neuropathol Commun. 2022. PMID: 35642016 Free PMC article.
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
Tian L, Li Y, Edmonson MN, Zhou X, Newman S, McLeod C, Thrasher A, Liu Y, Tang B, Rusch MC, Easton J, Ma J, Davis E, Trull A, Michael JR, Szlachta K, Mullighan C, Baker SJ, Downing JR, Ellison DW, Zhang J. Tian L, et al. Among authors: szlachta k. Genome Biol. 2020 May 28;21(1):126. doi: 10.1186/s13059-020-02043-x. Genome Biol. 2020. PMID: 32466770 Free PMC article.
22 results