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Causal Learning via Manifold Regularization.
Hill SM, Oates CJ, Blythe DA, Mukherjee S. Hill SM, et al. Among authors: mukherjee s. J Mach Learn Res. 2019;20:127. J Mach Learn Res. 2019. PMID: 31992961 Free PMC article.
Causal network inference using biochemical kinetics.
Oates CJ, Dondelinger F, Bayani N, Korkola J, Gray JW, Mukherjee S. Oates CJ, et al. Among authors: mukherjee s. Bioinformatics. 2014 Sep 1;30(17):i468-74. doi: 10.1093/bioinformatics/btu452. Bioinformatics. 2014. PMID: 25161235 Free PMC article.
Context Specificity in Causal Signaling Networks Revealed by Phosphoprotein Profiling.
Hill SM, Nesser NK, Johnson-Camacho K, Jeffress M, Johnson A, Boniface C, Spencer SE, Lu Y, Heiser LM, Lawrence Y, Pande NT, Korkola JE, Gray JW, Mills GB, Mukherjee S, Spellman PT. Hill SM, et al. Among authors: mukherjee s. Cell Syst. 2017 Jan 25;4(1):73-83.e10. doi: 10.1016/j.cels.2016.11.013. Epub 2016 Dec 22. Cell Syst. 2017. PMID: 28017544 Free PMC article.
Inferring causal molecular networks: empirical assessment through a community-based effort.
Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK, Graim K, Bivol A, Wang H, Zhu F, Afsari B, Danilova LV, Favorov AV, Lee WS, Taylor D, Hu CW, Long BL, Noren DP, Bisberg AJ; HPN-DREAM Consortium; Mills GB, Gray JW, Kellen M, Norman T, Friend S, Qutub AA, Fertig EJ, Guan Y, Song M, Stuart JM, Spellman PT, Koeppl H, Stolovitzky G, Saez-Rodriguez J, Mukherjee S. Hill SM, et al. Among authors: mukherjee s. Nat Methods. 2016 Apr;13(4):310-8. doi: 10.1038/nmeth.3773. Epub 2016 Feb 22. Nat Methods. 2016. PMID: 26901648 Free PMC article.
Network Inference and Biological Dynamics.
Oates CJ, Mukherjee S. Oates CJ, et al. Among authors: mukherjee s. Ann Appl Stat. 2012 Sep;6(3):1209-1235. doi: 10.1214/11-AOAS532. Ann Appl Stat. 2012. PMID: 23284600 Free PMC article.
Network inference using steady-state data and Goldbeter-Koshland kinetics. [corrected].
Oates CJ, Hennessy BT, Lu Y, Mills GB, Mukherjee S. Oates CJ, et al. Among authors: mukherjee s. Bioinformatics. 2012 Sep 15;28(18):2342-8. doi: 10.1093/bioinformatics/bts459. Epub 2012 Jul 19. Bioinformatics. 2012. PMID: 22815361 Free PMC article.
AVAILABILITY: mukherjeelab.nki.nl/CODE/GK_Kinetics.zip CONTACT: c.j.oates@warwick.ac.uk; s.mukherjee@nki.nl SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online....
AVAILABILITY: mukherjeelab.nki.nl/CODE/GK_Kinetics.zip CONTACT: c.j.oates@warwick.ac.uk; s.mukherjee@nki.nl SUPPLEMENTARY INFO …
6,622 results