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The Burmese python genome reveals the molecular basis for extreme adaptation in snakes.
Castoe TA, de Koning AP, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, Polanco D, Dobry J, Vandewege MW, Li Q, Schott RK, Kapusta A, Minx P, Feschotte C, Uetz P, Ray DA, Hoffmann FG, Bogden R, Smith EN, Chang BS, Vonk FJ, Casewell NR, Henkel CV, Richardson MK, Mackessy SP, Bronikowski AM, Yandell M, Warren WC, Secor SM, Pollock DD. Castoe TA, et al. Among authors: pollock dd. Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20645-50. doi: 10.1073/pnas.1314475110. Epub 2013 Dec 2. Proc Natl Acad Sci U S A. 2013. PMID: 24297902 Free PMC article.
Inference of transposable element ancestry.
Wacholder AC, Cox C, Meyer TJ, Ruggiero RP, Vemulapalli V, Damert A, Carbone L, Pollock DD. Wacholder AC, et al. Among authors: pollock dd. PLoS Genet. 2014 Aug 14;10(8):e1004482. doi: 10.1371/journal.pgen.1004482. eCollection 2014 Aug. PLoS Genet. 2014. PMID: 25121584 Free PMC article.
Repetitive elements may comprise over two-thirds of the human genome.
de Koning AP, Gu W, Castoe TA, Batzer MA, Pollock DD. de Koning AP, et al. Among authors: pollock dd. PLoS Genet. 2011 Dec;7(12):e1002384. doi: 10.1371/journal.pgen.1002384. Epub 2011 Dec 1. PLoS Genet. 2011. PMID: 22144907 Free PMC article.
A call for benchmarking transposable element annotation methods.
Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, Wheeler TJ, Bureau TE, Blanchette M. Hoen DR, et al. Among authors: pollock dd. Mob DNA. 2015 Aug 4;6:13. doi: 10.1186/s13100-015-0044-6. eCollection 2015. Mob DNA. 2015. PMID: 26244060 Free PMC article.
SINEs, evolution and genome structure in the opossum.
Gu W, Ray DA, Walker JA, Barnes EW, Gentles AJ, Samollow PB, Jurka J, Batzer MA, Pollock DD. Gu W, et al. Among authors: pollock dd. Gene. 2007 Jul 1;396(1):46-58. doi: 10.1016/j.gene.2007.02.028. Epub 2007 Mar 19. Gene. 2007. PMID: 17442506
112 results