Heider D - Search Results

1

Comparative analyses of error handling strategies for next-generation sequencing in precision medicine.

F Löchel H, Heider D. F Löchel H, et al. Among authors: heider d. Sci Rep. 2020 Apr 1;10(1):5750. doi: 10.1038/s41598-020-62675-8. Sci Rep. 2020. PMID: 32238883 Free PMC article.

2

gammaBOriS: Identification and Taxonomic Classification of Origins of Replication in Gammaproteobacteria using Motif-based Machine Learning.

Sperlea T, Muth L, Martin R, Weigel C, Waldminghaus T, Heider D. Sperlea T, et al. Among authors: heider d. Sci Rep. 2020 Apr 21;10(1):6727. doi: 10.1038/s41598-020-63424-7. Sci Rep. 2020. PMID: 32317695 Free PMC article.

3

Mushroom data creation, curation, and simulation to support classification tasks.

Wagner D, Heider D, Hattab G. Wagner D, et al. Among authors: heider d. Sci Rep. 2021 Apr 14;11(1):8134. doi: 10.1038/s41598-021-87602-3. Sci Rep. 2021. PMID: 33854157 Free PMC article.

4

gCUP: rapid GPU-based HIV-1 co-receptor usage prediction for next-generation sequencing.

Olejnik M, Steuwer M, Gorlatch S, Heider D. Olejnik M, et al. Among authors: heider d. Bioinformatics. 2014 Nov 15;30(22):3272-3. doi: 10.1093/bioinformatics/btu535. Epub 2014 Aug 13. Bioinformatics. 2014. PMID: 25123901

AVAILABILITY AND IMPLEMENTATION: The source code can be downloaded at http://www.heiderlab.de CONTACT: d.heider@wz-straubing.de....

AVAILABILITY AND IMPLEMENTATION: The source code can be downloaded at http://www.heiderlab.de CONTACT: d.heider@wz-straubing.d …

5

Genotypic Prediction of Co-receptor Tropism of HIV-1 Subtypes A and C.

Riemenschneider M, Cashin KY, Budeus B, Sierra S, Shirvani-Dastgerdi E, Bayanolhagh S, Kaiser R, Gorry PR, Heider D. Riemenschneider M, et al. Among authors: heider d. Sci Rep. 2016 Apr 29;6:24883. doi: 10.1038/srep24883. Sci Rep. 2016. PMID: 27126912 Free PMC article.

6

eccCL: parallelized GPU implementation of Ensemble Classifier Chains.

Riemenschneider M, Herbst A, Rasch A, Gorlatch S, Heider D. Riemenschneider M, et al. Among authors: heider d. BMC Bioinformatics. 2017 Aug 17;18(1):371. doi: 10.1186/s12859-017-1783-9. BMC Bioinformatics. 2017. PMID: 28818036 Free PMC article.

7

SCOTCH: subtype A coreceptor tropism classification in HIV-1.

Löchel HF, Riemenschneider M, Frishman D, Heider D. Löchel HF, et al. Among authors: heider d. Bioinformatics. 2018 Aug 1;34(15):2575-2580. doi: 10.1093/bioinformatics/bty170. Bioinformatics. 2018. PMID: 29554213

8

Four high-quality draft genome assemblies of the marine heterotrophic nanoflagellate Cafeteria roenbergensis.

Hackl T, Martin R, Barenhoff K, Duponchel S, Heider D, Fischer MG. Hackl T, et al. Among authors: heider d. Sci Data. 2020 Jan 21;7(1):29. doi: 10.1038/s41597-020-0363-4. Sci Data. 2020. PMID: 31964893 Free PMC article.

9

MESA: automated assessment of synthetic DNA fragments and simulation of DNA synthesis, storage, sequencing and PCR errors.

Schwarz M, Welzel M, Kabdullayeva T, Becker A, Freisleben B, Heider D. Schwarz M, et al. Among authors: heider d. Bioinformatics. 2020 Jun 1;36(11):3322-3326. doi: 10.1093/bioinformatics/btaa140. Bioinformatics. 2020. PMID: 32129840 Free PMC article.

10

Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads.

Welzel M, Lange A, Heider D, Schwarz M, Freisleben B, Jensen M, Boenigk J, Beisser D. Welzel M, et al. Among authors: heider d. BMC Bioinformatics. 2020 Nov 16;21(1):526. doi: 10.1186/s12859-020-03852-4. BMC Bioinformatics. 2020. PMID: 33198651 Free PMC article.

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