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BioHackathon 2015: Semantics of data for life sciences and reproducible research.
Vos RA, Katayama T, Mishima H, Kawano S, Kawashima S, Kim JD, Moriya Y, Tokimatsu T, Yamaguchi A, Yamamoto Y, Wu H, Amstutz P, Antezana E, Aoki NP, Arakawa K, Bolleman JT, Bolton E, Bonnal RJP, Bono H, Burger K, Chiba H, Cohen KB, Deutsch EW, Fernández-Breis JT, Fu G, Fujisawa T, Fukushima A, García A, Goto N, Groza T, Hercus C, Hoehndorf R, Itaya K, Juty N, Kawashima T, Kim JH, Kinjo AR, Kotera M, Kozaki K, Kumagai S, Kushida T, Lütteke T, Matsubara M, Miyamoto J, Mohsen A, Mori H, Naito Y, Nakazato T, Nguyen-Xuan J, Nishida K, Nishida N, Nishide H, Ogishima S, Ohta T, Okuda S, Paten B, Perret JL, Prathipati P, Prins P, Queralt-Rosinach N, Shinmachi D, Suzuki S, Tabata T, Takatsuki T, Taylor K, Thompson M, Uchiyama I, Vieira B, Wei CH, Wilkinson M, Yamada I, Yamanaka R, Yoshitake K, Yoshizawa AC, Dumontier M, Kosaki K, Takagi T. Vos RA, et al. Among authors: garcia a. F1000Res. 2020 Feb 24;9:136. doi: 10.12688/f1000research.18236.1. eCollection 2020. F1000Res. 2020. PMID: 32308977 Free PMC article.
Ten simple rules to run a successful BioHackathon.
Garcia L, Antezana E, Garcia A, Bolton E, Jimenez R, Prins P, Banda JM, Katayama T. Garcia L, et al. Among authors: garcia a. PLoS Comput Biol. 2020 May 7;16(5):e1007808. doi: 10.1371/journal.pcbi.1007808. eCollection 2020 May. PLoS Comput Biol. 2020. PMID: 32379758 Free PMC article. No abstract available.
Biotea: semantics for Pubmed Central.
Garcia A, Lopez F, Garcia L, Giraldo O, Bucheli V, Dumontier M. Garcia A, et al. Among authors: garcia l. PeerJ. 2018 Jan 2;6:e4201. doi: 10.7717/peerj.4201. eCollection 2018. PeerJ. 2018. PMID: 29312824 Free PMC article.
Anatomy of BioJS, an open source community for the life sciences.
Yachdav G, Goldberg T, Wilzbach S, Dao D, Shih I, Choudhary S, Crouch S, Franz M, García A, García LJ, Grüning BA, Inupakutika D, Sillitoe I, Thanki AS, Vieira B, Villaveces JM, Schneider MV, Lewis S, Pettifer S, Rost B, Corpas M. Yachdav G, et al. Among authors: garcia a, garcia lj. Elife. 2015 Jul 8;4:e07009. doi: 10.7554/eLife.07009. Elife. 2015. PMID: 26153621 Free PMC article.
BioJS: an open source standard for biological visualisation - its status in 2014.
Corpas M, Jimenez R, Carbon SJ, García A, Garcia L, Goldberg T, Gomez J, Kalderimis A, Lewis SE, Mulvany I, Pawlik A, Rowland F, Salazar G, Schreiber F, Sillitoe I, Spooner WH, Thanki AS, Villaveces JM, Yachdav G, Hermjakob H. Corpas M, et al. Among authors: garcia a, garcia l. F1000Res. 2014 Feb 13;3:55. doi: 10.12688/f1000research.3-55.v1. eCollection 2014. F1000Res. 2014. PMID: 25075290 Free PMC article.
Using semantics for representing experimental protocols.
Giraldo O, García A, López F, Corcho O. Giraldo O, et al. Among authors: garcia a. J Biomed Semantics. 2017 Nov 13;8(1):52. doi: 10.1186/s13326-017-0160-y. J Biomed Semantics. 2017. PMID: 29132408 Free PMC article.
BioJS: an open source JavaScript framework for biological data visualization.
Gómez J, García LJ, Salazar GA, Villaveces J, Gore S, García A, Martín MJ, Launay G, Alcántara R, Del-Toro N, Dumousseau M, Orchard S, Velankar S, Hermjakob H, Zong C, Ping P, Corpas M, Jiménez RC. Gómez J, et al. Among authors: garcia a, garcia lj. Bioinformatics. 2013 Apr 15;29(8):1103-4. doi: 10.1093/bioinformatics/btt100. Epub 2013 Feb 23. Bioinformatics. 2013. PMID: 23435069 Free PMC article.
Dasty3, a WEB framework for DAS.
Villaveces JM, Jimenez RC, Garcia LJ, Salazar GA, Gel B, Mulder N, Martin M, Garcia A, Hermjakob H. Villaveces JM, et al. Among authors: garcia a, garcia lj. Bioinformatics. 2011 Sep 15;27(18):2616-7. doi: 10.1093/bioinformatics/btr433. Epub 2011 Jul 28. Bioinformatics. 2011. PMID: 21798964 Free PMC article.
Dasty2, an Ajax protein DAS client.
Jimenez RC, Quinn AF, Garcia A, Labarga A, O'Neill K, Martinez F, Salazar GA, Hermjakob H. Jimenez RC, et al. Among authors: garcia a. Bioinformatics. 2008 Sep 15;24(18):2119-21. doi: 10.1093/bioinformatics/btn387. Epub 2008 Aug 11. Bioinformatics. 2008. PMID: 18694895
8,235 results