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SwabExpress: An end-to-end protocol for extraction-free COVID-19 testing.
Srivatsan S, Heidl S, Pfau B, Martin BK, Han PD, Zhong W, van Raay K, McDermot E, Opsahl J, Gamboa L, Smith N, Truong M, Cho S, Barrow KA, Rich LM, Stone J, Wolf CR, McCulloch DJ, Kim AE, Brandstetter E, Sohlberg SL, Ilcisin M, Geyer RE, Chen W, Gehring J; Seattle Flu Study Investigators; Kosuri S, Bedford T, Rieder MJ, Nickerson DA, Chu HY, Konnick EQ, Debley JS, Shendure J, Lockwood CM, Starita LM. Srivatsan S, et al. Among authors: bedford t. bioRxiv [Preprint]. 2021 Apr 29:2020.04.22.056283. doi: 10.1101/2020.04.22.056283. bioRxiv. 2021. PMID: 32511368 Free PMC article. Updated. Preprint.
Interactions among 17 respiratory pathogens: a cross-sectional study using clinical and community surveillance data.
Burstein R, Althouse BM, Adler A, Akullian A, Brandstetter E, Cho S, Emanuels A, Fay K, Gamboa L, Han P, Huden K, Ilcisin M, Izzo M, Jackson ML, Kim AE, Kimball L, Lacombe K, Lee J, Logue JK, Rogers J, Chung E, Sibley TR, Van Raay K, Wenger E, Wolf CR, Boeckh M, Chu H, Duchin J, Rieder M, Shendure J, Starita LM, Viboud C, Bedford T, Englund JA, Famulare M. Burstein R, et al. Among authors: bedford t. medRxiv [Preprint]. 2022 Feb 6:2022.02.04.22270474. doi: 10.1101/2022.02.04.22270474. medRxiv. 2022. PMID: 35169816 Free PMC article. Preprint.
Local-Scale phylodynamics reveal differential community impact of SARS-CoV-2 in metropolitan US county.
Paredes MI, Perofsky AC, Frisbie L, Moncla LH, Roychoudhury P, Xie H, Mohamed Bakhash SA, Kong K, Arnould I, Nguyen TV, Wendm ST, Hajian P, Ellis S, Mathias PC, Greninger AL, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, Stone J, McDermot E, Truong M, Shendure J, Oltean HN, Viboud C, Chu H, Müller NF, Bedford T. Paredes MI, et al. Among authors: bedford t. medRxiv [Preprint]. 2022 Dec 16:2022.12.15.22283536. doi: 10.1101/2022.12.15.22283536. medRxiv. 2022. PMID: 36561171 Free PMC article. Updated. Preprint.
Tiny swabs: nasal swabs integrated into tube caps facilitate large-scale self-collected SARS-CoV-2 testing.
Pfau B, Opsahl J, Crew R, Best S, Han PD, Heidl S, McDermot E, Stone J, Schwabe-Fry K, MacMillan MP, O'Hanlon J, Sohlberg S, Acker Z, Ehmen B, Englund JA, Konnick EQ, Chu HY, Weil AA, Lockwood CM, Starita LM; Seattle Flu Alliance Investigators. Pfau B, et al. J Clin Microbiol. 2024 Feb 14;62(2):e0128523. doi: 10.1128/jcm.01285-23. Epub 2023 Dec 22. J Clin Microbiol. 2024. PMID: 38131692 Free article.
Remote surveillance and detection of SARS-CoV-2 transmission among household members in King County, Washington.
Emanuels A, Casto AM, Heimonen J, O'Hanlon J, Chow EJ, Ogokeh C, Rolfes MA, Han PD, Hughes JP, Uyeki TM, Frazar C, Chung E, Starita LM, Englund JA, Chu HY; Seattle Flu Study Investigators. Emanuels A, et al. BMC Infect Dis. 2024 Mar 13;24(1):309. doi: 10.1186/s12879-024-09160-z. BMC Infect Dis. 2024. PMID: 38481147 Free PMC article. Clinical Trial.
Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county.
Paredes MI, Perofsky AC, Frisbie L, Moncla LH, Roychoudhury P, Xie H, Bakhash SAM, Kong K, Arnould I, Nguyen TV, Wendm ST, Hajian P, Ellis S, Mathias PC, Greninger AL, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, Stone J, McDermot E, Truong M, Shendure J, Oltean HN, Viboud C, Chu H, Müller NF, Bedford T. Paredes MI, et al. Among authors: bedford t. PLoS Pathog. 2024 Mar 26;20(3):e1012117. doi: 10.1371/journal.ppat.1012117. eCollection 2024 Mar. PLoS Pathog. 2024. PMID: 38530853 Free PMC article.
Impacts of human mobility on the citywide transmission dynamics of 18 respiratory viruses in pre- and post-COVID-19 pandemic years.
Perofsky AC, Hansen CL, Burstein R, Boyle S, Prentice R, Marshall C, Reinhart D, Capodanno B, Truong M, Schwabe-Fry K, Kuchta K, Pfau B, Acker Z, Lee J, Sibley TR, McDermot E, Rodriguez-Salas L, Stone J, Gamboa L, Han PD, Adler A, Waghmare A, Jackson ML, Famulare M, Shendure J, Bedford T, Chu HY, Englund JA, Starita LM, Viboud C. Perofsky AC, et al. Among authors: bedford t. Nat Commun. 2024 May 16;15(1):4164. doi: 10.1038/s41467-024-48528-2. Nat Commun. 2024. PMID: 38755171 Free PMC article.
Before the Flood.
Seattle Front Line Infection Prevention, Public Health, and Clinical Healthcare Teams. Seattle Front Line Infection Prevention, Public Health, and Clinical Healthcare Teams. Clin Infect Dis. 2020 Dec 3;71(9):2513-2515. doi: 10.1093/cid/ciaa393. Clin Infect Dis. 2020. PMID: 32255483 Free PMC article. No abstract available.
Positive selection underlies repeated knockout of ORF8 in SARS-CoV-2 evolution.
Wagner C, Kistler KE, Perchetti GA, Baker N, Frisbie LA, Torres LM, Aragona F, Yun C, Figgins M, Greninger AL, Cox A, Oltean HN, Roychoudhury P, Bedford T. Wagner C, et al. Among authors: bedford t. Nat Commun. 2024 Apr 13;15(1):3207. doi: 10.1038/s41467-024-47599-5. Nat Commun. 2024. PMID: 38615031 Free PMC article.
226 results