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Practical considerations for measuring the effective reproductive number, R t.
Gostic KM, McGough L, Baskerville EB, Abbott S, Joshi K, Tedijanto C, Kahn R, Niehus R, Hay J, De Salazar PM, Hellewell J, Meakin S, Munday J, Bosse NI, Sherrat K, Thompson RN, White LF, Huisman JS, Scire J, Bonhoeffer S, Stadler T, Wallinga J, Funk S, Lipsitch M, Cobey S. Gostic KM, et al. Among authors: bonhoeffer s. medRxiv [Preprint]. 2020 Aug 28:2020.06.18.20134858. doi: 10.1101/2020.06.18.20134858. medRxiv. 2020. PMID: 32607522 Free PMC article. Updated. Preprint.
Estimating the basic reproductive number from viral sequence data.
Stadler T, Kouyos R, von Wyl V, Yerly S, Böni J, Bürgisser P, Klimkait T, Joos B, Rieder P, Xie D, Günthard HF, Drummond AJ, Bonhoeffer S; Swiss HIV Cohort Study. Stadler T, et al. Among authors: bonhoeffer s. Mol Biol Evol. 2012 Jan;29(1):347-57. doi: 10.1093/molbev/msr217. Epub 2011 Sep 2. Mol Biol Evol. 2012. PMID: 21890480
Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics.
Kühnert D, Kouyos R, Shirreff G, Pečerska J, Scherrer AU, Böni J, Yerly S, Klimkait T, Aubert V, Günthard HF, Stadler T, Bonhoeffer S; Swiss HIV Cohort Study. Kühnert D, et al. Among authors: bonhoeffer s. PLoS Pathog. 2018 Feb 20;14(2):e1006895. doi: 10.1371/journal.ppat.1006895. eCollection 2018 Feb. PLoS Pathog. 2018. PMID: 29462208 Free PMC article.
COVID-19 infectivity profile correction.
Ashcroft P, Huisman JS, Lehtinen S, Bouman JA, Althaus CL, Regoes RR, Bonhoeffer S. Ashcroft P, et al. Among authors: bonhoeffer s. Swiss Med Wkly. 2020 Aug 5;150:w20336. doi: 10.4414/smw.2020.20336. eCollection 2020 Jul 27. Swiss Med Wkly. 2020. PMID: 32757177 Free article. No abstract available.
226 results