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The COVID-19 Gene and Drug Set Library.
Kuleshov MV, Clarke DJB, Kropiwnicki E, Jagodnik KM, Bartal A, Evangelista JE, Zhou A, Ferguson LB, Lachmann A, Ma'ayan A. Kuleshov MV, et al. Among authors: kropiwnicki e. Res Sq [Preprint]. 2020 May 13:rs.3.rs-28582. doi: 10.21203/rs.3.rs-28582/v1. Res Sq. 2020. PMID: 32702729 Free PMC article. Updated. Preprint.
The COVID-19 Drug and Gene Set Library.
Kuleshov MV, Stein DJ, Clarke DJB, Kropiwnicki E, Jagodnik KM, Bartal A, Evangelista JE, Hom J, Cheng M, Bailey A, Zhou A, Ferguson LB, Lachmann A, Ma'ayan A. Kuleshov MV, et al. Among authors: kropiwnicki e. Patterns (N Y). 2020 Sep 11;1(6):100090. doi: 10.1016/j.patter.2020.100090. Epub 2020 Jul 25. Patterns (N Y). 2020. PMID: 32838343 Free PMC article.
Gene Set Knowledge Discovery with Enrichr.
Xie Z, Bailey A, Kuleshov MV, Clarke DJB, Evangelista JE, Jenkins SL, Lachmann A, Wojciechowicz ML, Kropiwnicki E, Jagodnik KM, Jeon M, Ma'ayan A. Xie Z, et al. Among authors: kropiwnicki e. Curr Protoc. 2021 Mar;1(3):e90. doi: 10.1002/cpz1.90. Curr Protoc. 2021. PMID: 33780170 Free PMC article.
ChEA3: transcription factor enrichment analysis by orthogonal omics integration.
Keenan AB, Torre D, Lachmann A, Leong AK, Wojciechowicz ML, Utti V, Jagodnik KM, Kropiwnicki E, Wang Z, Ma'ayan A. Keenan AB, et al. Among authors: kropiwnicki e. Nucleic Acids Res. 2019 Jul 2;47(W1):W212-W224. doi: 10.1093/nar/gkz446. Nucleic Acids Res. 2019. PMID: 31114921 Free PMC article.
Prioritizing Pain-Associated Targets with Machine Learning.
Jeon M, Jagodnik KM, Kropiwnicki E, Stein DJ, Ma'ayan A. Jeon M, et al. Among authors: kropiwnicki e. Biochemistry. 2021 May 11;60(18):1430-1446. doi: 10.1021/acs.biochem.0c00930. Epub 2021 Feb 19. Biochemistry. 2021. PMID: 33606503
Gene and drug landing page aggregator.
Clarke DJB, Kuleshov MV, Xie Z, Evangelista JE, Meyers MR, Kropiwnicki E, Jenkins SL, Ma'ayan A. Clarke DJB, et al. Among authors: kropiwnicki e. Bioinform Adv. 2022 Feb 28;2(1):vbac013. doi: 10.1093/bioadv/vbac013. eCollection 2022. Bioinform Adv. 2022. PMID: 35368424 Free PMC article.
Getting Started with LINCS Datasets and Tools.
Xie Z, Kropiwnicki E, Wojciechowicz ML, Jagodnik KM, Shu I, Bailey A, Clarke DJB, Jeon M, Evangelista JE, V Kuleshov M, Lachmann A, Parigi AA, Sanchez JM, Jenkins SL, Ma'ayan A. Xie Z, et al. Among authors: kropiwnicki e. Curr Protoc. 2022 Jul;2(7):e487. doi: 10.1002/cpz1.487. Curr Protoc. 2022. PMID: 35876555 Free PMC article.
Appyters: Turning Jupyter Notebooks into data-driven web apps.
Clarke DJB, Jeon M, Stein DJ, Moiseyev N, Kropiwnicki E, Dai C, Xie Z, Wojciechowicz ML, Litz S, Hom J, Evangelista JE, Goldman L, Zhang S, Yoon C, Ahamed T, Bhuiyan S, Cheng M, Karam J, Jagodnik KM, Shu I, Lachmann A, Ayling S, Jenkins SL, Ma'ayan A. Clarke DJB, et al. Among authors: kropiwnicki e. Patterns (N Y). 2021 Mar 4;2(3):100213. doi: 10.1016/j.patter.2021.100213. eCollection 2021 Mar 12. Patterns (N Y). 2021. PMID: 33748796 Free PMC article.
12 results