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An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona.
Ladner JT, Larsen BB, Bowers JR, Hepp CM, Bolyen E, Folkerts M, Sheridan K, Pfeiffer A, Yaglom H, Lemmer D, Sahl JW, Kaelin EA, Maqsood R, Bokulich NA, Quirk G, Watts TD, Komatsu KK, Waddell V, Lim ES, Caporaso JG, Engelthaler DM, Worobey M, Keim P. Ladner JT, et al. mBio. 2020 Sep 4;11(5):e02107-20. doi: 10.1128/mBio.02107-20. mBio. 2020. PMID: 32887735 Free PMC article.
The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers.
Sahl JW, Vazquez AJ, Hall CM, Busch JD, Tuanyok A, Mayo M, Schupp JM, Lummis M, Pearson T, Shippy K, Colman RE, Allender CJ, Theobald V, Sarovich DS, Price EP, Hutcheson A, Korlach J, LiPuma JJ, Ladner J, Lovett S, Koroleva G, Palacios G, Limmathurotsakul D, Wuthiekanun V, Wongsuwan G, Currie BJ, Keim P, Wagner DM. Sahl JW, et al. mBio. 2016 Sep 20;7(5):e00846-16. doi: 10.1128/mBio.00846-16. mBio. 2016. PMID: 27651357 Free PMC article.
Burkholderia humptydooensis sp. nov., a New Species Related to Burkholderia thailandensis and the Fifth Member of the Burkholderia pseudomallei Complex.
Tuanyok A, Mayo M, Scholz H, Hall CM, Allender CJ, Kaestli M, Ginther J, Spring-Pearson S, Bollig MC, Stone JK, Settles EW, Busch JD, Sidak-Loftis L, Sahl JW, Thomas A, Kreutzer L, Georgi E, Gee JE, Bowen RA, Ladner JT, Lovett S, Koroleva G, Palacios G, Wagner DM, Currie BJ, Keim P. Tuanyok A, et al. Among authors: ladner jt. Appl Environ Microbiol. 2017 Feb 15;83(5):e02802-16. doi: 10.1128/AEM.02802-16. Print 2017 Mar 1. Appl Environ Microbiol. 2017. PMID: 27986727 Free PMC article.
Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity.
Bolyen E, Dillon MR, Bokulich NA, Ladner JT, Larsen BB, Hepp CM, Lemmer D, Sahl JW, Sanchez A, Holdgraf C, Sewell C, Choudhury AG, Stachurski J, McKay M, Simard A, Engelthaler DM, Worobey M, Keim P, Caporaso JG. Bolyen E, et al. Among authors: ladner jt. F1000Res. 2020 Jun 29;9:657. doi: 10.12688/f1000research.24751.2. eCollection 2020. F1000Res. 2020. PMID: 33500774 Free PMC article.
COVID-19 vaccination elicits an evolving, cross-reactive antibody response to epitopes conserved with endemic coronavirus spike proteins.
Elko EA, Nelson GA, Mead HL, Kelley EJ, Carvalho ST, Sarbo NG, Harms CE, Le Verche V, Cardoso AA, Ely JL, Boyle AS, Piña A, Henson SN, Rahee F, Keim PS, Celona KR, Yi J, Settles EW, Bota DA, Yu GC, Morris SR, Zaia JA, Ladner JT, Altin JA. Elko EA, et al. Among authors: ladner jt. Cell Rep. 2022 Jul 5;40(1):111022. doi: 10.1016/j.celrep.2022.111022. Epub 2022 Jun 13. Cell Rep. 2022. PMID: 35753310 Free PMC article.
Tracking virus outbreaks in the twenty-first century.
Grubaugh ND, Ladner JT, Lemey P, Pybus OG, Rambaut A, Holmes EC, Andersen KG. Grubaugh ND, et al. Among authors: ladner jt. Nat Microbiol. 2019 Jan;4(1):10-19. doi: 10.1038/s41564-018-0296-2. Epub 2018 Dec 13. Nat Microbiol. 2019. PMID: 30546099 Free PMC article. Review.
Ebola Virus Epidemiology and Evolution in Nigeria.
Folarin OA, Ehichioya D, Schaffner SF, Winnicki SM, Wohl S, Eromon P, West KL, Gladden-Young A, Oyejide NE, Matranga CB, Deme AB, James A, Tomkins-Tinch C, Onyewurunwa K, Ladner JT, Palacios G, Nosamiefan I, Andersen KG, Omilabu S, Park DJ, Yozwiak NL, Nasidi A, Garry RF, Tomori O, Sabeti PC, Happi CT. Folarin OA, et al. Among authors: ladner jt. J Infect Dis. 2016 Oct 15;214(suppl 3):S102-S109. doi: 10.1093/infdis/jiw190. Epub 2016 Jul 4. J Infect Dis. 2016. PMID: 27377746 Free PMC article.
Genomic epidemiology reveals multiple introductions of Zika virus into the United States.
Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, Oliveira G, Pronty D, Barcellona CM, Metsky HC, Baniecki ML, Barnes KG, Chak B, Freije CA, Gladden-Young A, Gnirke A, Luo C, MacInnis B, Matranga CB, Park DJ, Qu J, Schaffner SF, Tomkins-Tinch C, West KL, Winnicki SM, Wohl S, Yozwiak NL, Quick J, Fauver JR, Khan K, Brent SE, Reiner RC Jr, Lichtenberger PN, Ricciardi MJ, Bailey VK, Watkins DI, Cone MR, Kopp EW 4th, Hogan KN, Cannons AC, Jean R, Monaghan AJ, Garry RF, Loman NJ, Faria NR, Porcelli MC, Vasquez C, Nagle ER, Cummings DAT, Stanek D, Rambaut A, Sanchez-Lockhart M, Sabeti PC, Gillis LD, Michael SF, Bedford T, Pybus OG, Isern S, Palacios G, Andersen KG. Grubaugh ND, et al. Among authors: ladner jt. Nature. 2017 Jun 15;546(7658):401-405. doi: 10.1038/nature22400. Epub 2017 May 24. Nature. 2017. PMID: 28538723 Free PMC article.
106 results