Kinney JB - Search Results

1

Evolution of DNA replication origin specification and gene silencing mechanisms.

Hu Y, Tareen A, Sheu YJ, Ireland WT, Speck C, Li H, Joshua-Tor L, Kinney JB, Stillman B. Hu Y, et al. Among authors: kinney jb. Nat Commun. 2020 Oct 14;11(1):5175. doi: 10.1038/s41467-020-18964-x. Nat Commun. 2020. PMID: 33056978 Free PMC article.

2

Domain within the helicase subunit Mcm4 integrates multiple kinase signals to control DNA replication initiation and fork progression.

Sheu YJ, Kinney JB, Lengronne A, Pasero P, Stillman B. Sheu YJ, et al. Among authors: kinney jb. Proc Natl Acad Sci U S A. 2014 May 6;111(18):E1899-908. doi: 10.1073/pnas.1404063111. Epub 2014 Apr 16. Proc Natl Acad Sci U S A. 2014. PMID: 24740181 Free PMC article.

3

Concerted activities of Mcm4, Sld3, and Dbf4 in control of origin activation and DNA replication fork progression.

Sheu YJ, Kinney JB, Stillman B. Sheu YJ, et al. Among authors: kinney jb. Genome Res. 2016 Mar;26(3):315-30. doi: 10.1101/gr.195248.115. Epub 2016 Jan 5. Genome Res. 2016. PMID: 26733669 Free PMC article.

4

Rapid and tunable method to temporally control gene editing based on conditional Cas9 stabilization.

Senturk S, Shirole NH, Nowak DG, Corbo V, Pal D, Vaughan A, Tuveson DA, Trotman LC, Kinney JB, Sordella R. Senturk S, et al. Among authors: kinney jb. Nat Commun. 2017 Feb 22;8:14370. doi: 10.1038/ncomms14370. Nat Commun. 2017. PMID: 28224990 Free PMC article.

5

Rapid generation of drug-resistance alleles at endogenous loci using CRISPR-Cas9 indel mutagenesis.

Ipsaro JJ, Shen C, Arai E, Xu Y, Kinney JB, Joshua-Tor L, Vakoc CR, Shi J. Ipsaro JJ, et al. Among authors: kinney jb. PLoS One. 2017 Feb 23;12(2):e0172177. doi: 10.1371/journal.pone.0172177. eCollection 2017. PLoS One. 2017. PMID: 28231254 Free PMC article.

6

Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria.

Belliveau NM, Barnes SL, Ireland WT, Jones DL, Sweredoski MJ, Moradian A, Hess S, Kinney JB, Phillips R. Belliveau NM, et al. Among authors: kinney jb. Proc Natl Acad Sci U S A. 2018 May 22;115(21):E4796-E4805. doi: 10.1073/pnas.1722055115. Epub 2018 May 4. Proc Natl Acad Sci U S A. 2018. PMID: 29728462 Free PMC article.

7

Density Estimation on Small Data Sets.

Chen WC, Tareen A, Kinney JB. Chen WC, et al. Among authors: kinney jb. Phys Rev Lett. 2018 Oct 19;121(16):160605. doi: 10.1103/PhysRevLett.121.160605. Phys Rev Lett. 2018. PMID: 30387642 Free PMC article.

8

Mapping DNA sequence to transcription factor binding energy in vivo.

Barnes SL, Belliveau NM, Ireland WT, Kinney JB, Phillips R. Barnes SL, et al. Among authors: kinney jb. PLoS Comput Biol. 2019 Feb 4;15(2):e1006226. doi: 10.1371/journal.pcbi.1006226. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30716072 Free PMC article.

9

Logomaker: beautiful sequence logos in Python.

Tareen A, Kinney JB. Tareen A, et al. Among authors: kinney jb. Bioinformatics. 2020 Apr 1;36(7):2272-2274. doi: 10.1093/bioinformatics/btz921. Bioinformatics. 2020. PMID: 31821414 Free PMC article.

10

Deciphering the regulatory genome of Escherichia coli, one hundred promoters at a time.

Ireland WT, Beeler SM, Flores-Bautista E, McCarty NS, Röschinger T, Belliveau NM, Sweredoski MJ, Moradian A, Kinney JB, Phillips R. Ireland WT, et al. Among authors: kinney jb. Elife. 2020 Sep 21;9:e55308. doi: 10.7554/eLife.55308. Elife. 2020. PMID: 32955440 Free PMC article.

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