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Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City region.
Maurano MT, Ramaswami S, Zappile P, Dimartino D, Boytard L, Ribeiro-Dos-Santos AM, Vulpescu NA, Westby G, Shen G, Feng X, Hogan MS, Ragonnet-Cronin M, Geidelberg L, Marier C, Meyn P, Zhang Y, Cadley J, Ordoñez R, Luther R, Huang E, Guzman E, Arguelles-Grande C, Argyropoulos KV, Black M, Serrano A, Call ME, Kim MJ, Belovarac B, Gindin T, Lytle A, Pinnell J, Vougiouklakis T, Chen J, Lin LH, Rapkiewicz A, Raabe V, Samanovic MI, Jour G, Osman I, Aguero-Rosenfeld M, Mulligan MJ, Volz EM, Cotzia P, Snuderl M, Heguy A. Maurano MT, et al. Among authors: hogan ms. Genome Res. 2020 Dec;30(12):1781-1788. doi: 10.1101/gr.266676.120. Epub 2020 Oct 22. Genome Res. 2020. PMID: 33093069 Free PMC article. Clinical Trial.
Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City Region.
Maurano MT, Ramaswami S, Zappile P, Dimartino D, Boytard L, Ribeiro-Dos-Santos AM, Vulpescu NA, Westby G, Shen G, Feng X, Hogan MS, Ragonnet-Cronin M, Geidelberg L, Marier C, Meyn P, Zhang Y, Cadley J, Ordoñez R, Luther R, Huang E, Guzman E, Arguelles-Grande C, Argyropoulos KV, Black M, Serrano A, Call ME, Kim MJ, Belovarac B, Gindin T, Lytle A, Pinnell J, Vougiouklakis T, Chen J, Lin LH, Rapkiewicz A, Raabe V, Samanovic MI, Jour G, Osman I, Aguero-Rosenfeld M, Mulligan MJ, Volz EM, Cotzia P, Snuderl M, Heguy A. Maurano MT, et al. Among authors: hogan ms. medRxiv [Preprint]. 2020 Aug 19:2020.04.15.20064931. doi: 10.1101/2020.04.15.20064931. medRxiv. 2020. PMID: 32511587 Free PMC article. Updated. Preprint.
Genomic context sensitivity of insulator function.
Ribeiro-Dos-Santos AM, Hogan MS, Luther RD, Brosh R, Maurano MT. Ribeiro-Dos-Santos AM, et al. Among authors: hogan ms. Genome Res. 2022 Mar;32(3):425-436. doi: 10.1101/gr.276449.121. Epub 2022 Jan 26. Genome Res. 2022. PMID: 35082140 Free PMC article.
A versatile platform for locus-scale genome rewriting and verification.
Brosh R, Laurent JM, Ordoñez R, Huang E, Hogan MS, Hitchcock AM, Mitchell LA, Pinglay S, Cadley JA, Luther RD, Truong DM, Boeke JD, Maurano MT. Brosh R, et al. Among authors: hogan ms. Proc Natl Acad Sci U S A. 2021 Mar 9;118(10):e2023952118. doi: 10.1073/pnas.2023952118. Proc Natl Acad Sci U S A. 2021. PMID: 33649239 Free PMC article.
Tissue context determines the penetrance of regulatory DNA variation.
Halow JM, Byron R, Hogan MS, Ordoñez R, Groudine M, Bender MA, Stamatoyannopoulos JA, Maurano MT. Halow JM, et al. Among authors: hogan ms. Nat Commun. 2021 May 14;12(1):2850. doi: 10.1038/s41467-021-23139-3. Nat Commun. 2021. PMID: 33990600 Free PMC article.
De novo assembly and delivery to mouse cells of a 101 kb functional human gene.
Mitchell LA, McCulloch LH, Pinglay S, Berger H, Bosco N, Brosh R, Bulajić M, Huang E, Hogan MS, Martin JA, Mazzoni EO, Davoli T, Maurano MT, Boeke JD. Mitchell LA, et al. Among authors: hogan ms. Genetics. 2021 May 17;218(1):iyab038. doi: 10.1093/genetics/iyab038. Genetics. 2021. PMID: 33742653 Free PMC article.
An effector index to predict target genes at GWAS loci.
Forgetta V, Jiang L, Vulpescu NA, Hogan MS, Chen S, Morris JA, Grinek S, Benner C, Jang DK, Hoang Q, Burtt N, Flannick JA, McCarthy MI, Fauman E, Greenwood CMT, Maurano MT, Richards JB. Forgetta V, et al. Among authors: hogan ms. Hum Genet. 2022 Aug;141(8):1431-1447. doi: 10.1007/s00439-022-02434-z. Epub 2022 Feb 11. Hum Genet. 2022. PMID: 35147782
Genomic context sensitizes regulatory elements to genetic disruption.
Ordoñez R, Zhang W, Ellis G, Zhu Y, Ashe HJ, Ribeiro-Dos-Santos AM, Brosh R, Huang E, Hogan MS, Boeke JD, Maurano MT. Ordoñez R, et al. Among authors: hogan ms. Mol Cell. 2024 May 16;84(10):1842-1854.e7. doi: 10.1016/j.molcel.2024.04.013. Mol Cell. 2024. PMID: 38759624
Genomic context sensitizes regulatory elements to genetic disruption.
Ordoñez R, Zhang W, Ellis G, Zhu Y, Ashe HJ, Ribeiro-Dos-Santos AM, Brosh R, Huang E, Hogan MS, Boeke JD, Maurano MT. Ordoñez R, et al. Among authors: hogan ms. bioRxiv [Preprint]. 2024 Mar 12:2023.07.02.547201. doi: 10.1101/2023.07.02.547201. bioRxiv. 2024. PMID: 37781588 Free PMC article. Updated. Preprint.
Synthetic regulatory genomics uncovers enhancer context dependence at the Sox2 locus.
Brosh R, Coelho C, Ribeiro-Dos-Santos AM, Ellis G, Hogan MS, Ashe HJ, Somogyi N, Ordoñez R, Luther RD, Huang E, Boeke JD, Maurano MT. Brosh R, et al. Among authors: hogan ms. Mol Cell. 2023 Apr 6;83(7):1140-1152.e7. doi: 10.1016/j.molcel.2023.02.027. Epub 2023 Mar 16. Mol Cell. 2023. PMID: 36931273 Free PMC article.
17 results