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Connecting sequence and biology in the laboratory mouse.
Baldarelli RM, Hill DP, Blake JA, Adachi J, Furuno M, Bradt D, Corbani LE, Cousins S, Frazer KS, Qi D, Yang L, Ramachandran S, Reed D, Zhu Y, Kasukawa T, Ringwald M, King BL, Maltais LJ, McKenzie LM, Schriml LM, Maglott D, Church DM, Pruitt K, Eppig JT, Richardson JE, Kadin JA, Bult CJ. Baldarelli RM, et al. Among authors: blake ja. Genome Res. 2003 Jun;13(6B):1505-19. doi: 10.1101/gr.991003. Genome Res. 2003. PMID: 12819150 Free PMC article.
The mouse Gene Expression Database (GXD): updates and enhancements.
Hill DP, Begley DA, Finger JH, Hayamizu TF, McCright IJ, Smith CM, Beal JS, Corbani LE, Blake JA, Eppig JT, Kadin JA, Richardson JE, Ringwald M. Hill DP, et al. Among authors: blake ja. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D568-71. doi: 10.1093/nar/gkh069. Nucleic Acids Res. 2004. PMID: 14681482 Free PMC article.
Ontological visualization of protein-protein interactions.
Drabkin HJ, Hollenbeck C, Hill DP, Blake JA. Drabkin HJ, et al. Among authors: blake ja. BMC Bioinformatics. 2005 Feb 11;6:29. doi: 10.1186/1471-2105-6-29. BMC Bioinformatics. 2005. PMID: 15707487 Free PMC article.
A procedure for assessing GO annotation consistency.
Dolan ME, Ni L, Camon E, Blake JA. Dolan ME, et al. Among authors: blake ja. Bioinformatics. 2005 Jun;21 Suppl 1:i136-43. doi: 10.1093/bioinformatics/bti1019. Bioinformatics. 2005. PMID: 15961450
Gene Ontology annotations: what they mean and where they come from.
Hill DP, Smith B, McAndrews-Hill MS, Blake JA. Hill DP, et al. Among authors: blake ja. BMC Bioinformatics. 2008 Apr 29;9 Suppl 5(Suppl 5):S2. doi: 10.1186/1471-2105-9-S5-S2. BMC Bioinformatics. 2008. PMID: 18460184 Free PMC article.
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.
Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP. Peña-Castillo L, et al. Among authors: blake ja. Genome Biol. 2008;9 Suppl 1(Suppl 1):S2. doi: 10.1186/gb-2008-9-s1-s2. Epub 2008 Jun 27. Genome Biol. 2008. PMID: 18613946 Free PMC article.
207 results