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Curating gene sets: challenges and opportunities for integrative analysis.
Bubier J, Hill D, Mukherjee G, Reynolds T, Baker EJ, Berger A, Emerson J, Blake JA, Chesler EJ. Bubier J, et al. Among authors: mukherjee g. Database (Oxford). 2019 Jan 1;2019:baz036. doi: 10.1093/database/baz036. Database (Oxford). 2019. PMID: 30888410 Free PMC article.
ArrayExpress: a public database of gene expression data at EBI.
Rocca-Serra P, Brazma A, Parkinson H, Sarkans U, Shojatalab M, Contrino S, Vilo J, Abeygunawardena N, Mukherjee G, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Sansone SA. Rocca-Serra P, et al. Among authors: mukherjee g. C R Biol. 2003 Oct-Nov;326(10-11):1075-8. doi: 10.1016/j.crvi.2003.09.026. C R Biol. 2003. PMID: 14744115 Free article.
ArrayExpress--a public repository for microarray gene expression data at the EBI.
Parkinson H, Sarkans U, Shojatalab M, Abeygunawardena N, Contrino S, Coulson R, Farne A, Lara GG, Holloway E, Kapushesky M, Lilja P, Mukherjee G, Oezcimen A, Rayner T, Rocca-Serra P, Sharma A, Sansone S, Brazma A. Parkinson H, et al. Among authors: mukherjee g. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D553-5. doi: 10.1093/nar/gki056. Nucleic Acids Res. 2005. PMID: 15608260 Free PMC article.
The ArrayExpress gene expression database: a software engineering and implementation perspective.
Sarkans U, Parkinson H, Lara GG, Oezcimen A, Sharma A, Abeygunawardena N, Contrino S, Holloway E, Rocca-Serra P, Mukherjee G, Shojatalab M, Kapushesky M, Sansone SA, Farne A, Rayner T, Brazma A. Sarkans U, et al. Among authors: mukherjee g. Bioinformatics. 2005 Apr 15;21(8):1495-501. doi: 10.1093/bioinformatics/bti157. Epub 2004 Nov 25. Bioinformatics. 2005. PMID: 15564302
Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress.
Mukherjee G, Abeygunawardena N, Parkinson H, Contrino S, Durinck S, Farne A, Holloway E, Lilja P, Moreau Y, Oezcimen A, Rayner T, Sharma A, Brazma A, Sarkans U, Shojatalab M. Mukherjee G, et al. Plant Physiol. 2005 Oct;139(2):632-6. doi: 10.1104/pp.105.063156. Plant Physiol. 2005. PMID: 16219923 Free PMC article.
Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database.
Cochrane G, Akhtar R, Aldebert P, Althorpe N, Baldwin A, Bates K, Bhattacharyya S, Bonfield J, Bower L, Browne P, Castro M, Cox T, Demiralp F, Eberhardt R, Faruque N, Hoad G, Jang M, Kulikova T, Labarga A, Leinonen R, Leonard S, Lin Q, Lopez R, Lorenc D, McWilliam H, Mukherjee G, Nardone F, Plaister S, Robinson S, Sobhany S, Vaughan R, Wu D, Zhu W, Apweiler R, Hubbard T, Birney E. Cochrane G, et al. Among authors: mukherjee g. Nucleic Acids Res. 2008 Jan;36(Database issue):D5-12. doi: 10.1093/nar/gkm1018. Epub 2007 Nov 26. Nucleic Acids Res. 2008. PMID: 18039715 Free PMC article.
EMBL Nucleotide Sequence Database in 2006.
Kulikova T, Akhtar R, Aldebert P, Althorpe N, Andersson M, Baldwin A, Bates K, Bhattacharyya S, Bower L, Browne P, Castro M, Cochrane G, Duggan K, Eberhardt R, Faruque N, Hoad G, Kanz C, Lee C, Leinonen R, Lin Q, Lombard V, Lopez R, Lorenc D, McWilliam H, Mukherjee G, Nardone F, Pastor MP, Plaister S, Sobhany S, Stoehr P, Vaughan R, Wu D, Zhu W, Apweiler R. Kulikova T, et al. Among authors: mukherjee g. Nucleic Acids Res. 2007 Jan;35(Database issue):D16-20. doi: 10.1093/nar/gkl913. Epub 2006 Dec 5. Nucleic Acids Res. 2007. PMID: 17148479 Free PMC article.
344 results