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Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand.
Geoghegan JL, Ren X, Storey M, Hadfield J, Jelley L, Jefferies S, Sherwood J, Paine S, Huang S, Douglas J, Mendes FK, Sporle A, Baker MG, Murdoch DR, French N, Simpson CR, Welch D, Drummond AJ, Holmes EC, Duchêne S, de Ligt J. Geoghegan JL, et al. Among authors: drummond aj. Nat Commun. 2020 Dec 11;11(1):6351. doi: 10.1038/s41467-020-20235-8. Nat Commun. 2020. PMID: 33311501 Free PMC article.
The evolutionary genetics of viral emergence.
Holmes EC, Drummond AJ. Holmes EC, et al. Among authors: drummond aj. Curr Top Microbiol Immunol. 2007;315:51-66. doi: 10.1007/978-3-540-70962-6_3. Curr Top Microbiol Immunol. 2007. PMID: 17848060 Free PMC article. Review.
Epidemic dynamics revealed in dengue evolution.
Bennett SN, Drummond AJ, Kapan DD, Suchard MA, Muñoz-Jordán JL, Pybus OG, Holmes EC, Gubler DJ. Bennett SN, et al. Among authors: drummond aj. Mol Biol Evol. 2010 Apr;27(4):811-8. doi: 10.1093/molbev/msp285. Epub 2009 Dec 4. Mol Biol Evol. 2010. PMID: 19965886 Free PMC article.
Recursive algorithms for phylogenetic tree counting.
Gavryushkina A, Welch D, Drummond AJ. Gavryushkina A, et al. Among authors: drummond aj. Algorithms Mol Biol. 2013 Oct 28;8(1):26. doi: 10.1186/1748-7188-8-26. Algorithms Mol Biol. 2013. PMID: 24164709 Free PMC article.
Efficient Bayesian inference under the structured coalescent.
Vaughan TG, Kühnert D, Popinga A, Welch D, Drummond AJ. Vaughan TG, et al. Among authors: drummond aj. Bioinformatics. 2014 Aug 15;30(16):2272-9. doi: 10.1093/bioinformatics/btu201. Epub 2014 Apr 20. Bioinformatics. 2014. PMID: 24753484 Free PMC article.
Inferring Ancestral Recombination Graphs from Bacterial Genomic Data.
Vaughan TG, Welch D, Drummond AJ, Biggs PJ, George T, French NP. Vaughan TG, et al. Among authors: drummond aj. Genetics. 2017 Feb;205(2):857-870. doi: 10.1534/genetics.116.193425. Epub 2016 Dec 22. Genetics. 2017. PMID: 28007885 Free PMC article.
120 results