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Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand.
Geoghegan JL, Ren X, Storey M, Hadfield J, Jelley L, Jefferies S, Sherwood J, Paine S, Huang S, Douglas J, Mendes FK, Sporle A, Baker MG, Murdoch DR, French N, Simpson CR, Welch D, Drummond AJ, Holmes EC, Duchêne S, de Ligt J. Geoghegan JL, et al. Among authors: holmes ec. Nat Commun. 2020 Dec 11;11(1):6351. doi: 10.1038/s41467-020-20235-8. Nat Commun. 2020. PMID: 33311501 Free PMC article.
The evolutionary genetics of viral emergence.
Holmes EC, Drummond AJ. Holmes EC, et al. Curr Top Microbiol Immunol. 2007;315:51-66. doi: 10.1007/978-3-540-70962-6_3. Curr Top Microbiol Immunol. 2007. PMID: 17848060 Free PMC article. Review.
The genomic and epidemiological dynamics of human influenza A virus.
Rambaut A, Pybus OG, Nelson MI, Viboud C, Taubenberger JK, Holmes EC. Rambaut A, et al. Among authors: holmes ec. Nature. 2008 May 29;453(7195):615-9. doi: 10.1038/nature06945. Epub 2008 Apr 16. Nature. 2008. PMID: 18418375 Free PMC article.
Epidemic dynamics revealed in dengue evolution.
Bennett SN, Drummond AJ, Kapan DD, Suchard MA, Muñoz-Jordán JL, Pybus OG, Holmes EC, Gubler DJ. Bennett SN, et al. Among authors: holmes ec. Mol Biol Evol. 2010 Apr;27(4):811-8. doi: 10.1093/molbev/msp285. Epub 2009 Dec 4. Mol Biol Evol. 2010. PMID: 19965886 Free PMC article.
Molecular evolution and antigenic variation of European brown hare syndrome virus (EBHSV).
Lopes AM, Capucci L, Gavier-Widén D, Le Gall-Reculé G, Brocchi E, Barbieri I, Quéméner A, Le Pendu J, Geoghegan JL, Holmes EC, Esteves PJ, Abrantes J. Lopes AM, et al. Among authors: holmes ec. Virology. 2014 Nov;468-470:104-112. doi: 10.1016/j.virol.2014.08.002. Epub 2014 Aug 23. Virology. 2014. PMID: 25155199 Free article.
A generic assay for whole-genome amplification and deep sequencing of enterovirus A71.
Tan le V, Tuyen NT, Thanh TT, Ngan TT, Van HM, Sabanathan S, Van TT, Thanh le TM, Nguyet LA, Geoghegan JL, Ong KC, Perera D, Hang VT, Ny NT, Anh NT, Ha do Q, Qui PT, Viet do C, Tuan HM, Wong KT, Holmes EC, Chau NV, Thwaites G, van Doorn HR. Tan le V, et al. Among authors: holmes ec. J Virol Methods. 2015 Apr;215-216:30-6. doi: 10.1016/j.jviromet.2015.02.011. Epub 2015 Feb 19. J Virol Methods. 2015. PMID: 25704598 Free PMC article.
943 results