Nusinow DP - Search Results

1

Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries.

Kuljanin M, Mitchell DC, Schweppe DK, Gikandi AS, Nusinow DP, Bulloch NJ, Vinogradova EV, Wilson DL, Kool ET, Mancias JD, Cravatt BF, Gygi SP. Kuljanin M, et al. Among authors: nusinow dp. Nat Biotechnol. 2021 May;39(5):630-641. doi: 10.1038/s41587-020-00778-3. Epub 2021 Jan 4. Nat Biotechnol. 2021. PMID: 33398154 Free PMC article.

2

A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides.

Chick JM, Kolippakkam D, Nusinow DP, Zhai B, Rad R, Huttlin EL, Gygi SP. Chick JM, et al. Among authors: nusinow dp. Nat Biotechnol. 2015 Jul;33(7):743-9. doi: 10.1038/nbt.3267. Epub 2015 Jun 15. Nat Biotechnol. 2015. PMID: 26076430 Free PMC article.

3

Active Instrument Engagement Combined with a Real-Time Database Search for Improved Performance of Sample Multiplexing Workflows.

Erickson BK, Mintseris J, Schweppe DK, Navarrete-Perea J, Erickson AR, Nusinow DP, Paulo JA, Gygi SP. Erickson BK, et al. Among authors: nusinow dp. J Proteome Res. 2019 Mar 1;18(3):1299-1306. doi: 10.1021/acs.jproteome.8b00899. Epub 2019 Feb 4. J Proteome Res. 2019. PMID: 30658528 Free PMC article.

4

Quantitative Proteomics of the Cancer Cell Line Encyclopedia.

Nusinow DP, Szpyt J, Ghandi M, Rose CM, McDonald ER 3rd, Kalocsay M, Jané-Valbuena J, Gelfand E, Schweppe DK, Jedrychowski M, Golji J, Porter DA, Rejtar T, Wang YK, Kryukov GV, Stegmeier F, Erickson BK, Garraway LA, Sellers WR, Gygi SP. Nusinow DP, et al. Cell. 2020 Jan 23;180(2):387-402.e16. doi: 10.1016/j.cell.2019.12.023. Cell. 2020. PMID: 31978347 Free PMC article.

5

Investigation of Proteomic and Phosphoproteomic Responses to Signaling Network Perturbations Reveals Functional Pathway Organizations in Yeast.

Li J, Paulo JA, Nusinow DP, Huttlin EL, Gygi SP. Li J, et al. Among authors: nusinow dp. Cell Rep. 2019 Nov 12;29(7):2092-2104.e4. doi: 10.1016/j.celrep.2019.10.034. Cell Rep. 2019. PMID: 31722220 Free PMC article.

6

Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.

Huttlin EL, Bruckner RJ, Navarrete-Perea J, Cannon JR, Baltier K, Gebreab F, Gygi MP, Thornock A, Zarraga G, Tam S, Szpyt J, Gassaway BM, Panov A, Parzen H, Fu S, Golbazi A, Maenpaa E, Stricker K, Guha Thakurta S, Zhang T, Rad R, Pan J, Nusinow DP, Paulo JA, Schweppe DK, Vaites LP, Harper JW, Gygi SP. Huttlin EL, et al. Among authors: nusinow dp. Cell. 2021 May 27;184(11):3022-3040.e28. doi: 10.1016/j.cell.2021.04.011. Epub 2021 May 6. Cell. 2021. PMID: 33961781 Free PMC article.

7

Erratum: A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides.

Chick JM, Kolippakkam D, Nusinow DP, Zhai B, Rad R, Huttlin EL, Gygi SP. Chick JM, et al. Among authors: nusinow dp. Nat Biotechnol. 2015 Aug;33(8):882. doi: 10.1038/nbt0815-882d. Nat Biotechnol. 2015. PMID: 26252148 No abstract available.

8

Network-based inference from complex proteomic mixtures using SNIPE.

Nusinow DP, Kiezun A, O'Connell DJ, Chick JM, Yue Y, Maas RL, Gygi SP, Sunyaev SR. Nusinow DP, et al. Bioinformatics. 2012 Dec 1;28(23):3115-22. doi: 10.1093/bioinformatics/bts594. Epub 2012 Oct 11. Bioinformatics. 2012. PMID: 23060611 Free PMC article.

9

MultiNotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes.

McAlister GC, Nusinow DP, Jedrychowski MP, Wühr M, Huttlin EL, Erickson BK, Rad R, Haas W, Gygi SP. McAlister GC, et al. Among authors: nusinow dp. Anal Chem. 2014 Jul 15;86(14):7150-8. doi: 10.1021/ac502040v. Epub 2014 Jul 3. Anal Chem. 2014. PMID: 24927332 Free PMC article.

10

Quantitative temporal viromics: an approach to investigate host-pathogen interaction.

Weekes MP, Tomasec P, Huttlin EL, Fielding CA, Nusinow D, Stanton RJ, Wang ECY, Aicheler R, Murrell I, Wilkinson GWG, Lehner PJ, Gygi SP. Weekes MP, et al. Cell. 2014 Jun 5;157(6):1460-1472. doi: 10.1016/j.cell.2014.04.028. Cell. 2014. PMID: 24906157 Free PMC article.

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