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The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support.
Irmisch A, Bonilla X, Chevrier S, Lehmann KV, Singer F, Toussaint NC, Esposito C, Mena J, Milani ES, Casanova R, Stekhoven DJ, Wegmann R, Jacob F, Sobottka B, Goetze S, Kuipers J, Sarabia Del Castillo J, Prummer M, Tuncel MA, Menzel U, Jacobs A, Engler S, Sivapatham S, Frei AL, Gut G, Ficek J, Miglino N; Tumor Profiler Consortium; Aebersold R, Bacac M, Beerenwinkel N, Beisel C, Bodenmiller B, Dummer R, Heinzelmann-Schwarz V, Koelzer VH, Manz MG, Moch H, Pelkmans L, Snijder B, Theocharides APA, Tolnay M, Wicki A, Wollscheid B, Rätsch G, Levesque MP. Irmisch A, et al. Among authors: kuipers j. Cancer Cell. 2021 Mar 8;39(3):288-293. doi: 10.1016/j.ccell.2021.01.004. Epub 2021 Jan 21. Cancer Cell. 2021. PMID: 33482122 Free article.
Tree inference for single-cell data.
Jahn K, Kuipers J, Beerenwinkel N. Jahn K, et al. Among authors: kuipers j. Genome Biol. 2016 May 5;17:86. doi: 10.1186/s13059-016-0936-x. Genome Biol. 2016. PMID: 27149953 Free PMC article.
Large-scale inference of conjunctive Bayesian networks.
Montazeri H, Kuipers J, Kouyos R, Böni J, Yerly S, Klimkait T, Aubert V, Günthard HF, Beerenwinkel N; Swiss HIV Cohort Study. Montazeri H, et al. Among authors: kuipers j. Bioinformatics. 2016 Sep 1;32(17):i727-i735. doi: 10.1093/bioinformatics/btw459. Bioinformatics. 2016. PMID: 27587695
Mutational interactions define novel cancer subgroups.
Kuipers J, Thurnherr T, Moffa G, Suter P, Behr J, Goosen R, Christofori G, Beerenwinkel N. Kuipers J, et al. Nat Commun. 2018 Oct 19;9(1):4353. doi: 10.1038/s41467-018-06867-x. Nat Commun. 2018. PMID: 30341300 Free PMC article.
348 results