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Immune cell gene expression signatures in diffuse glioma are associated with IDH mutation status, patient outcome and malignant cell state, and highlight the importance of specific cell subsets in glioma biology.
Mehani B, Asanigari S, Chung HJ, Dazelle K, Singh A, Hannenhalli S, Aldape K. Mehani B, et al. Among authors: hannenhalli s. Acta Neuropathol Commun. 2022 Feb 10;10(1):19. doi: 10.1186/s40478-022-01323-w. Acta Neuropathol Commun. 2022. PMID: 35144680 Free PMC article.
Why transcription factor binding sites are ten nucleotides long.
Stewart AJ, Hannenhalli S, Plotkin JB. Stewart AJ, et al. Among authors: hannenhalli s. Genetics. 2012 Nov;192(3):973-85. doi: 10.1534/genetics.112.143370. Epub 2012 Aug 10. Genetics. 2012. PMID: 22887818 Free PMC article.
Genome-wide prediction of synthetic rescue mediators of resistance to targeted and immunotherapy.
Sahu AD, S Lee J, Wang Z, Zhang G, Iglesias-Bartolome R, Tian T, Wei Z, Miao B, Nair NU, Ponomarova O, Friedman AA, Amzallag A, Moll T, Kasumova G, Greninger P, Egan RK, Damon LJ, Frederick DT, Jerby-Arnon L, Wagner A, Cheng K, Park SG, Robinson W, Gardner K, Boland G, Hannenhalli S, Herlyn M, Benes C, Flaherty K, Luo J, Gutkind JS, Ruppin E. Sahu AD, et al. Among authors: s lee j, hannenhalli s. Mol Syst Biol. 2019 Mar 11;15(3):e8323. doi: 10.15252/msb.20188323. Mol Syst Biol. 2019. PMID: 30858180 Free PMC article.
A transcription-centric model of SNP-age interaction.
Wang K, Basu M, Malin J, Hannenhalli S. Wang K, et al. Among authors: hannenhalli s. PLoS Genet. 2021 Mar 26;17(3):e1009427. doi: 10.1371/journal.pgen.1009427. eCollection 2021 Mar. PLoS Genet. 2021. PMID: 33770080 Free PMC article.
137 results