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Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples.
Xiao M, Liu X, Ji J, Li M, Li J, Yang L, Sun W, Ren P, Yang G, Zhao J, Liang T, Ren H, Chen T, Zhong H, Song W, Wang Y, Deng Z, Zhao Y, Ou Z, Wang D, Cai J, Cheng X, Feng T, Wu H, Gong Y, Yang H, Wang J, Xu X, Zhu S, Chen F, Zhang Y, Chen W, Li Y, Li J. Xiao M, et al. Among authors: li y, li j, li m. Genome Med. 2020 Jun 30;12(1):57. doi: 10.1186/s13073-020-00751-4. Genome Med. 2020. PMID: 32605661 Free PMC article.
A compromised specific humoral immune response against the SARS-CoV-2 receptor-binding domain is related to viral persistence and periodic shedding in the gastrointestinal tract.
Hu F, Chen F, Ou Z, Fan Q, Tan X, Wang Y, Pan Y, Ke B, Li L, Guan Y, Mo X, Wang J, Wang J, Luo C, Wen X, Li M, Ren P, Ke C, Li J, Lei C, Tang X, Li F. Hu F, et al. Among authors: li f, li j, li m, li l. Cell Mol Immunol. 2020 Nov;17(11):1119-1125. doi: 10.1038/s41423-020-00550-2. Epub 2020 Oct 9. Cell Mol Immunol. 2020. PMID: 33037400 Free PMC article.
Intra-host variation and evolutionary dynamics of SARS-CoV-2 populations in COVID-19 patients.
Wang Y, Wang D, Zhang L, Sun W, Zhang Z, Chen W, Zhu A, Huang Y, Xiao F, Yao J, Gan M, Li F, Luo L, Huang X, Zhang Y, Wong SS, Cheng X, Ji J, Ou Z, Xiao M, Li M, Li J, Ren P, Deng Z, Zhong H, Xu X, Song T, Mok CKP, Peiris M, Zhong N, Zhao J, Li Y, Li J, Zhao J. Wang Y, et al. Among authors: li f, li y, li j, li m. Genome Med. 2021 Feb 22;13(1):30. doi: 10.1186/s13073-021-00847-5. Genome Med. 2021. PMID: 33618765 Free PMC article.
A naturally isolated symbiotic bacterium suppresses flavivirus transmission by Aedes mosquitoes.
Zhang L, Wang D, Shi P, Li J, Niu J, Chen J, Wang G, Wu L, Chen L, Yang Z, Li S, Meng J, Ruan F, He Y, Zhao H, Ren Z, Wang Y, Liu Y, Shi X, Wang Y, Liu Q, Li J, Wang P, Wang J, Zhu Y, Cheng G. Zhang L, et al. Among authors: li s, li j. Science. 2024 Apr 19;384(6693):eadn9524. doi: 10.1126/science.adn9524. Epub 2024 Apr 19. Science. 2024. PMID: 38669573
Population Bottlenecks and Intra-host Evolution During Human-to-Human Transmission of SARS-CoV-2.
Wang D, Wang Y, Sun W, Zhang L, Ji J, Zhang Z, Cheng X, Li Y, Xiao F, Zhu A, Zhong B, Ruan S, Li J, Ren P, Ou Z, Xiao M, Li M, Deng Z, Zhong H, Li F, Wang WJ, Zhang Y, Chen W, Zhu S, Xu X, Jin X, Zhao J, Zhong N, Zhang W, Zhao J, Li J, Xu Y. Wang D, et al. Among authors: li f, li y, li j, li m. Front Med (Lausanne). 2021 Feb 15;8:585358. doi: 10.3389/fmed.2021.585358. eCollection 2021. Front Med (Lausanne). 2021. PMID: 33659260 Free PMC article.
Genomic epidemiology of SARS-CoV-2 in the UAE reveals novel virus mutation, patterns of co-infection and tissue specific host immune response.
Liu R, Wu P, Ogrodzki P, Mahmoud S, Liang K, Liu P, Francis SS, Khalak H, Liu D, Li J, Ma T, Chen F, Liu W, Huang X, He W, Yuan Z, Qiao N, Meng X, Alqarni B, Quilez J, Kusuma V, Lin L, Jin X, Yang C, Anton X, Koshy A, Yang H, Xu X, Wang J, Xiao P, Al Kaabi N, Fasihuddin MS, Selvaraj FA, Weber S, Al Hosani FI, Liu S, Zaher WA. Liu R, et al. Among authors: li j. Sci Rep. 2021 Jul 7;11(1):13971. doi: 10.1038/s41598-021-92851-3. Sci Rep. 2021. PMID: 34234167 Free PMC article.
Comprehensive characterization of plasma cell-free Echinococcus spp. DNA in echinococcosis patients using ultra-high-throughput sequencing.
Ji J, Li B, Li J, Danzeng W, Li J, Zhao Y, Qiangba G, Zhang Q, Renzhen N, Basang Z, Jia C, Gongsang Q, Ma J, Wang Y, Chen F, Zhou H, Huasang, Yin J, Xie J, Pei N, Cai H, Jiang H, Yang H, Wang J, Asan, Han X, Li J, Chen W, Yang D. Ji J, et al. Among authors: li j, li b. PLoS Negl Trop Dis. 2020 Apr 13;14(4):e0008148. doi: 10.1371/journal.pntd.0008148. eCollection 2020 Apr. PLoS Negl Trop Dis. 2020. PMID: 32282820 Free PMC article.
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