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Transmission dynamics of SARS-CoV-2 within-host diversity in two major hospital outbreaks in South Africa.
San JE, Ngcapu S, Kanzi AM, Tegally H, Fonseca V, Giandhari J, Wilkinson E, Nelson CW, Smidt W, Kiran AM, Chimukangara B, Pillay S, Singh L, Fish M, Gazy I, Martin DP, Khanyile K, Lessells R, de Oliveira T. San JE, et al. Among authors: kiran am. Virus Evol. 2021 Apr 21;7(1):veab041. doi: 10.1093/ve/veab041. eCollection 2021 Jan. Virus Evol. 2021. PMID: 34035952 Free PMC article.
A broad survey of DNA sequence data simulation tools.
Alosaimi S, Bandiang A, van Biljon N, Awany D, Thami PK, Tchamga MSS, Kiran A, Messaoud O, Hassan RIM, Mugo J, Ahmed A, Bope CD, Allali I, Mazandu GK, Mulder NJ, Chimusa ER. Alosaimi S, et al. Brief Funct Genomics. 2020 Jan 22;19(1):49-59. doi: 10.1093/bfgp/elz033. Brief Funct Genomics. 2020. PMID: 31867604 Free PMC article. Review.
Evolutionary Genomics at the Human-Environment Interface in Africa.
Svardal H, Rusuwa B, Linderoth T, Kiran A, Charmantier A, Lattorff HMG, Cagan A, Ommeh SC, Kamng'ona A, Katongo C, Santos ME, Durbin R, Kumwenda B, Visscher PM, von der Heyden S; Participants of SMBE Malawi. Svardal H, et al. Mol Biol Evol. 2020 Oct 1;37(10):3076-3080. doi: 10.1093/molbev/msaa132. Mol Biol Evol. 2020. PMID: 32442309
Region-specific diversification of the highly virulent serotype 1 Streptococcus pneumoniae.
Cornick JE, Chaguza C, Harris SR, Yalcin F, Senghore M, Kiran AM, Govindpershad S, Ousmane S, Plessis MD, Pluschke G, Ebruke C, McGee L, Sigaùque B, Collard JM, Antonio M, von Gottberg A, French N, Klugman KP, Heyderman RS, Bentley SD, Everett DB, For The PAGe Consortium. Cornick JE, et al. Among authors: kiran am. Microb Genom. 2015 Aug 11;1(2):e000027. doi: 10.1099/mgen.0.000027. eCollection 2015 Aug. Microb Genom. 2015. PMID: 28348812 Free PMC article.
Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi.
Chaguza C, Cornick JE, Andam CP, Gladstone RA, Alaerts M, Musicha P, Peno C, Bar-Zeev N, Kamng'ona AW, Kiran AM, Msefula CL, McGee L, Breiman RF, Kadioglu A, French N, Heyderman RS, Hanage WP, Bentley SD, Everett DB. Chaguza C, et al. Among authors: kiran am. Vaccine. 2017 Aug 16;35(35 Pt B):4594-4602. doi: 10.1016/j.vaccine.2017.07.009. Epub 2017 Jul 12. Vaccine. 2017. PMID: 28711389 Free PMC article.
Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study.
Lo SW, Gladstone RA, van Tonder AJ, Lees JA, du Plessis M, Benisty R, Givon-Lavi N, Hawkins PA, Cornick JE, Kwambana-Adams B, Law PY, Ho PL, Antonio M, Everett DB, Dagan R, von Gottberg A, Klugman KP, McGee L, Breiman RF, Bentley SD; Global Pneumococcal Sequencing Consortium. Lo SW, et al. Lancet Infect Dis. 2019 Jul;19(7):759-769. doi: 10.1016/S1473-3099(19)30297-X. Epub 2019 Jun 10. Lancet Infect Dis. 2019. PMID: 31196809 Free PMC article.
H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa.
Mulder NJ, Adebiyi E, Alami R, Benkahla A, Brandful J, Doumbia S, Everett D, Fadlelmola FM, Gaboun F, Gaseitsiwe S, Ghazal H, Hazelhurst S, Hide W, Ibrahimi A, Jaufeerally Fakim Y, Jongeneel CV, Joubert F, Kassim S, Kayondo J, Kumuthini J, Lyantagaye S, Makani J, Mansour Alzohairy A, Masiga D, Moussa A, Nash O, Ouwe Missi Oukem-Boyer O, Owusu-Dabo E, Panji S, Patterton H, Radouani F, Sadki K, Seghrouchni F, Tastan Bishop Ö, Tiffin N, Ulenga N; H3ABioNet Consortium. Mulder NJ, et al. Genome Res. 2016 Feb;26(2):271-7. doi: 10.1101/gr.196295.115. Epub 2015 Dec 1. Genome Res. 2016. PMID: 26627985 Free PMC article.
H3ABioNet genomic medicine and microbiome data portals hackathon proceedings.
Fadlelmola FM, Ghedira K, Hamdi Y, Hanachi M, Radouani F, Allali I, Kiran A, Zass L, Alsayed N, Fassatoui M, Samtal C, Ahmed S, Da Rocha J, Chaqsare S, Sallam RM, Chaouch M, Farahat M, Ssekagiri A, Parker Z, Adil M, Turkson M, Benchaalia A, Benkahla A, Panji S, Kassim S, Souiai O, Mulder N. Fadlelmola FM, et al. Database (Oxford). 2021 Apr 17;2021:baab016. doi: 10.1093/database/baab016. Database (Oxford). 2021. PMID: 33864455 Free PMC article.
29 results