Berger B - Search Results

1

Learning the protein language: Evolution, structure, and function.

Bepler T, Berger B. Bepler T, et al. Among authors: berger b. Cell Syst. 2021 Jun 16;12(6):654-669.e3. doi: 10.1016/j.cels.2021.05.017. Cell Syst. 2021. PMID: 34139171 Free PMC article.

2

A tree-decomposition approach to protein structure prediction.

Xu J, Jiao F, Berger B. Xu J, et al. Among authors: berger b. Proc IEEE Comput Syst Bioinform Conf. 2005:247-56. doi: 10.1109/csb.2005.9. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447982

3

Fold recognition and accurate sequence-structure alignment of sequences directing beta-sheet proteins.

McDonnell AV, Menke M, Palmer N, King J, Cowen L, Berger B. McDonnell AV, et al. Among authors: berger b. Proteins. 2006 Jun 1;63(4):976-85. doi: 10.1002/prot.20942. Proteins. 2006. PMID: 16547930

4

Enhancing Evolutionary Couplings with Deep Convolutional Neural Networks.

Liu Y, Palmedo P, Ye Q, Berger B, Peng J. Liu Y, et al. Among authors: berger b. Cell Syst. 2018 Jan 24;6(1):65-74.e3. doi: 10.1016/j.cels.2017.11.014. Epub 2017 Dec 20. Cell Syst. 2018. PMID: 29275173 Free PMC article.

5

Finding RNA structure in the unstructured RBPome.

Orenstein Y, Ohler U, Berger B. Orenstein Y, et al. Among authors: berger b. BMC Genomics. 2018 Feb 20;19(1):154. doi: 10.1186/s12864-018-4540-1. BMC Genomics. 2018. PMID: 29463232 Free PMC article.

6

Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs.

Bepler T, Morin A, Noble AJ, Brasch J, Shapiro L, Berger B. Bepler T, et al. Among authors: berger b. Res Comput Mol Biol. 2018 Apr;10812:245-247. Res Comput Mol Biol. 2018. PMID: 29707703 Free PMC article. No abstract available.

7

Visualization of clustered protocadherin neuronal self-recognition complexes.

Brasch J, Goodman KM, Noble AJ, Rapp M, Mannepalli S, Bahna F, Dandey VP, Bepler T, Berger B, Maniatis T, Potter CS, Carragher B, Honig B, Shapiro L. Brasch J, et al. Among authors: berger b. Nature. 2019 May;569(7755):280-283. doi: 10.1038/s41586-019-1089-3. Epub 2019 Apr 10. Nature. 2019. PMID: 30971825 Free PMC article.

8

Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs.

Bepler T, Morin A, Rapp M, Brasch J, Shapiro L, Noble AJ, Berger B. Bepler T, et al. Among authors: berger b. Nat Methods. 2019 Nov;16(11):1153-1160. doi: 10.1038/s41592-019-0575-8. Epub 2019 Oct 7. Nat Methods. 2019. PMID: 31591578 Free PMC article.

9

Topaz-Denoise: general deep denoising models for cryoEM and cryoET.

Bepler T, Kelley K, Noble AJ, Berger B. Bepler T, et al. Among authors: berger b. Nat Commun. 2020 Oct 15;11(1):5208. doi: 10.1038/s41467-020-18952-1. Nat Commun. 2020. PMID: 33060581 Free PMC article.

10

Leveraging Uncertainty in Machine Learning Accelerates Biological Discovery and Design.

Hie B, Bryson BD, Berger B. Hie B, et al. Among authors: berger b. Cell Syst. 2020 Nov 18;11(5):461-477.e9. doi: 10.1016/j.cels.2020.09.007. Epub 2020 Oct 15. Cell Syst. 2020. PMID: 33065027 Free article.

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