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Dnmt1 has de novo activity targeted to transposable elements.
Nat Struct Mol Biol. 2021 Jul;28(7):594-603. doi: 10.1038/s41594-021-00603-8. Epub 2021 Jun 17.
Nat Struct Mol Biol. 2021.
PMID: 34140676
Free PMC article.
TETs compete with DNMT3 activity in pluripotent cells at thousands of methylated somatic enhancers.
Charlton J, Jung EJ, Mattei AL, Bailly N, Liao J, Martin EJ, Giesselmann P, Brändl B, Stamenova EK, Müller FJ, Kiskinis E, Gnirke A, Smith ZD, Meissner A.
Charlton J, et al. Among authors: giesselmann p.
Nat Genet. 2020 Aug;52(8):819-827. doi: 10.1038/s41588-020-0639-9. Epub 2020 Jun 8.
Nat Genet. 2020.
PMID: 32514123
Free PMC article.
Item in Clipboard
Analysis of short tandem repeat expansions and their methylation state with nanopore sequencing.
Giesselmann P, Brändl B, Raimondeau E, Bowen R, Rohrandt C, Tandon R, Kretzmer H, Assum G, Galonska C, Siebert R, Ammerpohl O, Heron A, Schneider SA, Ladewig J, Koch P, Schuldt BM, Graham JE, Meissner A, Müller FJ.
Giesselmann P, et al.
Nat Biotechnol. 2019 Dec;37(12):1478-1481. doi: 10.1038/s41587-019-0293-x. Epub 2019 Nov 18.
Nat Biotechnol. 2019.
PMID: 31740840
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Nanopype: a modular and scalable nanopore data processing pipeline.
Giesselmann P, Hetzel S, Müller FJ, Meissner A, Kretzmer H.
Giesselmann P, et al.
Bioinformatics. 2019 Nov 1;35(22):4770-4772. doi: 10.1093/bioinformatics/btz461.
Bioinformatics. 2019.
PMID: 31192347
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Nanopype: a modular and scalable nanopore data processing pipeline.
Giesselmann P, Hetzel S, Müller FJ, Meissner A, Kretzmer H.
Giesselmann P, et al.
Bioinformatics. 2019 Nov 1;35(21):4536. doi: 10.1093/bioinformatics/btz547.
Bioinformatics. 2019.
PMID: 31386105
No abstract available.
Item in Clipboard
RLM: fast and simplified extraction of read-level methylation metrics from bisulfite sequencing data.
Hetzel S, Giesselmann P, Reinert K, Meissner A, Kretzmer H.
Hetzel S, et al. Among authors: giesselmann p.
Bioinformatics. 2021 Nov 5;37(21):3934-3935. doi: 10.1093/bioinformatics/btab663.
Bioinformatics. 2021.
PMID: 34601556
Free PMC article.
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T-REX17 is a transiently expressed non-coding RNA essential for human endoderm formation.
Landshammer A, Bolondi A, Kretzmer H, Much C, Buschow R, Rose A, Wu HJ, Mackowiak SD, Braendl B, Giesselmann P, Tornisiello R, Parsi KM, Huey J, Mielke T, Meierhofer D, Maehr R, Hnisz D, Michor F, Rinn JL, Meissner A.
Landshammer A, et al. Among authors: giesselmann p.
Elife. 2023 Jan 31;12:e83077. doi: 10.7554/eLife.83077.
Elife. 2023.
PMID: 36719724
Free PMC article.
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