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Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens.
Huddleston J, Hadfield J, Sibley TR, Lee J, Fay K, Ilcisin M, Harkins E, Bedford T, Neher RA, Hodcroft EB. Huddleston J, et al. Among authors: bedford t. J Open Source Softw. 2021;6(57):2906. doi: 10.21105/joss.02906. Epub 2021 Jan 7. J Open Source Softw. 2021. PMID: 34189396 Free PMC article.
Predictive Modeling of Influenza Shows the Promise of Applied Evolutionary Biology.
Morris DH, Gostic KM, Pompei S, Bedford T, Łuksza M, Neher RA, Grenfell BT, Lässig M, McCauley JW. Morris DH, et al. Among authors: bedford t. Trends Microbiol. 2018 Feb;26(2):102-118. doi: 10.1016/j.tim.2017.09.004. Epub 2017 Oct 30. Trends Microbiol. 2018. PMID: 29097090 Free PMC article. Review.
Nextstrain: real-time tracking of pathogen evolution.
Hadfield J, Megill C, Bell SM, Huddleston J, Potter B, Callender C, Sagulenko P, Bedford T, Neher RA. Hadfield J, et al. Among authors: bedford t. Bioinformatics. 2018 Dec 1;34(23):4121-4123. doi: 10.1093/bioinformatics/bty407. Bioinformatics. 2018. PMID: 29790939 Free PMC article.
Real-Time Analysis and Visualization of Pathogen Sequence Data.
Neher RA, Bedford T. Neher RA, et al. Among authors: bedford t. J Clin Microbiol. 2018 Oct 25;56(11):e00480-18. doi: 10.1128/JCM.00480-18. Print 2018 Nov. J Clin Microbiol. 2018. PMID: 30135232 Free PMC article. Review.
Early Detection of Covid-19 through a Citywide Pandemic Surveillance Platform.
Chu HY, Englund JA, Starita LM, Famulare M, Brandstetter E, Nickerson DA, Rieder MJ, Adler A, Lacombe K, Kim AE, Graham C, Logue J, Wolf CR, Heimonen J, McCulloch DJ, Han PD, Sibley TR, Lee J, Ilcisin M, Fay K, Burstein R, Martin B, Lockwood CM, Thompson M, Lutz B, Jackson M, Hughes JP, Boeckh M, Shendure J, Bedford T; Seattle Flu Study Investigators. Chu HY, et al. Among authors: bedford t. N Engl J Med. 2020 Jul 9;383(2):185-187. doi: 10.1056/NEJMc2008646. Epub 2020 May 1. N Engl J Med. 2020. PMID: 32356944 Free PMC article. No abstract available.
Cryptic transmission of SARS-CoV-2 in Washington State.
Bedford T, Greninger AL, Roychoudhury P, Starita LM, Famulare M, Huang ML, Nalla A, Pepper G, Reinhardt A, Xie H, Shrestha L, Nguyen TN, Adler A, Brandstetter E, Cho S, Giroux D, Han PD, Fay K, Frazar CD, Ilcisin M, Lacombe K, Lee J, Kiavand A, Richardson M, Sibley TR, Truong M, Wolf CR, Nickerson DA, Rieder MJ, Englund JA; Seattle Flu Study Investigators; Hadfield J, Hodcroft EB, Huddleston J, Moncla LH, Müller NF, Neher RA, Deng X, Gu W, Federman S, Chiu C, Duchin J, Gautom R, Melly G, Hiatt B, Dykema P, Lindquist S, Queen K, Tao Y, Uehara A, Tong S, MacCannell D, Armstrong GL, Baird GS, Chu HY, Shendure J, Jerome KR. Bedford T, et al. medRxiv [Preprint]. 2020 Apr 6:2020.04.02.20051417. doi: 10.1101/2020.04.02.20051417. medRxiv. 2020. PMID: 32511596 Free PMC article. Updated. Preprint.
226 results