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Gene-rich UV sex chromosomes harbor conserved regulators of sexual development.
Carey SB, Jenkins J, Lovell JT, Maumus F, Sreedasyam A, Payton AC, Shu S, Tiley GP, Fernandez-Pozo N, Healey A, Barry K, Chen C, Wang M, Lipzen A, Daum C, Saski CA, McBreen JC, Conrad RE, Kollar LM, Olsson S, Huttunen S, Landis JB, Burleigh JG, Wickett NJ, Johnson MG, Rensing SA, Grimwood J, Schmutz J, McDaniel SF. Carey SB, et al. Among authors: chen c. Sci Adv. 2021 Jun 30;7(27):eabh2488. doi: 10.1126/sciadv.abh2488. Print 2021 Jun. Sci Adv. 2021. PMID: 34193417 Free PMC article.
A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci.
Mamidi S, Healey A, Huang P, Grimwood J, Jenkins J, Barry K, Sreedasyam A, Shu S, Lovell JT, Feldman M, Wu J, Yu Y, Chen C, Johnson J, Sakakibara H, Kiba T, Sakurai T, Tavares R, Nusinow DA, Baxter I, Schmutz J, Brutnell TP, Kellogg EA. Mamidi S, et al. Among authors: chen c. Nat Biotechnol. 2020 Oct;38(10):1203-1210. doi: 10.1038/s41587-020-0681-2. Epub 2020 Oct 5. Nat Biotechnol. 2020. PMID: 33020633 Free PMC article.
CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner.
Peng M, Khosravi C, Lubbers RJM, Kun RS, Aguilar Pontes MV, Battaglia E, Chen C, Dalhuijsen S, Daly P, Lipzen A, Ng V, Yan J, Wang M, Visser J, Grigoriev IV, Mäkelä MR, de Vries RP. Peng M, et al. Among authors: chen c. Cell Surf. 2021 Mar 3;7:100050. doi: 10.1016/j.tcsw.2021.100050. eCollection 2021 Dec. Cell Surf. 2021. PMID: 33778219 Free PMC article.
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass.
Sun G, Wase N, Shu S, Jenkins J, Zhou B, Torres-Rodríguez JV, Chen C, Sandor L, Plott C, Yoshinga Y, Daum C, Qi P, Barry K, Lipzen A, Berry L, Pedersen C, Gottilla T, Foltz A, Yu H, O'Malley R, Zhang C, Devos KM, Sigmon B, Yu B, Obata T, Schmutz J, Schnable JC. Sun G, et al. Among authors: chen c. Nat Commun. 2022 Dec 13;13(1):7731. doi: 10.1038/s41467-022-35507-8. Nat Commun. 2022. PMID: 36513676 Free PMC article.
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.
Hensen N, Bonometti L, Westerberg I, Brännström IO, Guillou S, Cros-Aarteil S, Calhoun S, Haridas S, Kuo A, Mondo S, Pangilinan J, Riley R, LaButti K, Andreopoulos B, Lipzen A, Chen C, Yan M, Daum C, Ng V, Clum A, Steindorff A, Ohm RA, Martin F, Silar P, Natvig DO, Lalanne C, Gautier V, Ament-Velásquez SL, Kruys Å, Hutchinson MI, Powell AJ, Barry K, Miller AN, Grigoriev IV, Debuchy R, Gladieux P, Hiltunen Thorén M, Johannesson H. Hensen N, et al. Among authors: chen c. Mol Phylogenet Evol. 2023 Dec;189:107938. doi: 10.1016/j.ympev.2023.107938. Epub 2023 Oct 10. Mol Phylogenet Evol. 2023. PMID: 37820761 Free article.
Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae.
Ngan CY, Wong CH, Choi C, Yoshinaga Y, Louie K, Jia J, Chen C, Bowen B, Cheng H, Leonelli L, Kuo R, Baran R, García-Cerdán JG, Pratap A, Wang M, Lim J, Tice H, Daum C, Xu J, Northen T, Visel A, Bristow J, Niyogi KK, Wei CL. Ngan CY, et al. Among authors: chen c. Nat Plants. 2015 Jul 27;1:15107. doi: 10.1038/nplants.2015.107. Nat Plants. 2015. PMID: 27250540
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